Variant report

Variant	rs9526608
Chromosome Location	chr13:50422404-50422405
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr13:50243016..50245538-chr13:50422262..50424846,2	K562	blood:
2	chr13:50223077..50223615-chr13:50421808..50422802,2	K562	blood:
3	chr13:50226990..50227524-chr13:50421888..50422595,3	K562	blood:
4	chr13:50421820..50422768-chr13:50509785..50510743,4	MCF-7	breast:
5	chr13:50365342..50367960-chr13:50420871..50422430,2	K562	blood:
6	chr13:50243658..50244532-chr13:50421679..50422537,5	MCF-7	breast:
7	chr13:50403150..50405801-chr13:50420228..50422990,2	MCF-7	breast:
8	chr13:50420967..50423677-chr13:50509145..50511469,2	K562	blood:
9	chr13:50421554..50424015-chr13:50696890..50698594,2	K562	blood:
10	chr13:50393684..50395884-chr13:50422220..50424926,2	MCF-7	breast:
11	chr13:50243856..50246257-chr13:50421112..50423233,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000203547	Chromatin interaction
ENSG00000102753	Chromatin interaction
ENSG00000123178	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs11616903	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11618972	0.81[EUR][1000 genomes]
rs12862225	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1322630	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1322631	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1923661	1.00[JPT][hapmap]
rs2025225	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2146307	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2146309	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2181270	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2407704	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2407876	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3851168	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4245352	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4341664	0.81[AMR][1000 genomes]
rs4476074	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4941660	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4941661	0.86[ASN][1000 genomes]
rs4941662	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4941663	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4942882	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4942883	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4942884	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4942887	0.81[EUR][1000 genomes]
rs55684391	0.81[EUR][1000 genomes]
rs6561564	1.00[JPT][hapmap]
rs7139851	0.81[EUR][1000 genomes]
rs716371	1.00[JPT][hapmap]
rs7320463	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7321520	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7322624	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7327735	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7329943	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7330319	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7330526	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7491213	0.83[ASN][1000 genomes]
rs927483	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs927484	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9526609	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9526610	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9526613	0.81[EUR][1000 genomes]
rs9535372	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9535373	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9535374	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9535375	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9535376	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9535377	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9535379	0.97[ASN][1000 genomes]
rs9535381	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9535384	0.81[EUR][1000 genomes]

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:50421800-50422600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr13:50421800-50422600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
3	chr13:50421800-50422600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr13:50421800-50422600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr13:50421800-50422600	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr13:50421800-50422600	Active TSS	Primary hematopoietic stem cells	blood
7	chr13:50421800-50422600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chr13:50421800-50422600	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr13:50421800-50422600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
10	chr13:50421800-50422600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
11	chr13:50421800-50422600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr13:50421800-50422600	Enhancers	Aorta	Aorta
13	chr13:50421800-50422600	Enhancers	Liver	Liver
14	chr13:50421800-50422600	Bivalent Enhancer	Fetal Muscle Leg	muscle
15	chr13:50421800-50422600	Active TSS	HSMM	muscle
16	chr13:50421800-50422600	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr13:50421800-50422600	Active TSS	NHLF	lung
18	chr13:50422000-50422600	Active TSS	HUES6 Cell Line	embryonic stem cell
19	chr13:50422000-50422600	Active TSS	iPS-20b Cell Line	embryonic stem cell
20	chr13:50422000-50422600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr13:50422000-50422600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr13:50422000-50422600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
23	chr13:50422000-50422600	Bivalent/Poised TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr13:50422000-50422600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr13:50422000-50422600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr13:50422000-50422600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
27	chr13:50422000-50422600	Active TSS	Duodenum Smooth Muscle	Duodenum
28	chr13:50422000-50422600	Enhancers	Esophagus	oesophagus
29	chr13:50422000-50422600	Active TSS	Fetal Brain Male	brain
30	chr13:50422000-50422600	Active TSS	Rectal Smooth Muscle	rectum
31	chr13:50422000-50422600	Flanking Active TSS	Stomach Smooth Muscle	stomach
32	chr13:50422000-50422600	Enhancers	Thymus	Thymus
33	chr13:50422000-50422600	Active TSS	K562	blood
34	chr13:50422200-50422600	Active TSS	HUES48 Cell Line	embryonic stem cell
35	chr13:50422200-50422600	Enhancers	Primary neutrophils fromperipheralblood	blood
36	chr13:50422200-50422600	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
37	chr13:50422200-50422600	Enhancers	Primary T killer memory cells from peripheral blood	blood
38	chr13:50422200-50422600	Active TSS	Muscle Satellite Cultured Cells	--
39	chr13:50422200-50422600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
40	chr13:50422200-50422600	Flanking Active TSS	Brain Anterior Caudate	brain
41	chr13:50422200-50422600	Active TSS	Brain Inferior Temporal Lobe	brain
42	chr13:50422200-50422600	Bivalent/Poised TSS	Fetal Muscle Trunk	muscle
43	chr13:50422200-50422600	Enhancers	Fetal Thymus	thymus
44	chr13:50422200-50422600	Flanking Active TSS	Dnd41	blood
45	chr13:50422200-50422600	Active TSS	HMEC	breast
46	chr13:50422200-50422600	Active TSS	NHDF-Ad	bronchial
47	chr13:50422200-50431400	Weak transcription	Pancreas	Pancrea
48	chr13:50422200-50436600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr13:50422400-50422600	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
50	chr13:50422400-50422600	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung

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