Variant report

Variant	rs4341664
Chromosome Location	chr13:50434096-50434097
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:50432796..50435101-chr13:50508743..50511633,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000123178	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11616903	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1322630	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1322631	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2025225	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2146307	0.84[EUR][1000 genomes]
rs2146309	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2181270	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2407704	0.81[EUR][1000 genomes]
rs2407876	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3851168	0.81[EUR][1000 genomes]
rs4245352	0.84[AMR][1000 genomes]
rs4476074	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4941660	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4941662	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4941663	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4942882	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4942883	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7320463	0.81[AMR][1000 genomes]
rs7322624	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7329943	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7330319	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7330526	0.81[AMR][1000 genomes]
rs927483	0.84[EUR][1000 genomes]
rs927484	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9526608	0.81[AMR][1000 genomes]
rs9526609	0.83[AMR][1000 genomes]
rs9526610	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9535372	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9535374	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9535375	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9535376	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9535381	0.85[EUR][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:50422200-50436600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr13:50431200-50434600	Enhancers	HMEC	breast
3	chr13:50431400-50434200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr13:50431400-50434200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr13:50431600-50434200	Enhancers	NHDF-Ad	bronchial
6	chr13:50431600-50434600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr13:50432200-50434200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr13:50432400-50435400	Enhancers	Placenta	Placenta
9	chr13:50432800-50434200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr13:50433200-50434200	Enhancers	Pancreas	Pancrea
11	chr13:50433400-50435000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr13:50433600-50434200	Enhancers	Liver	Liver
13	chr13:50433600-50434200	Enhancers	NH-A	brain
14	chr13:50433800-50434200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr13:50433800-50434400	Enhancers	Osteobl	bone
16	chr13:50433800-50434600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr13:50433800-50435000	Enhancers	Muscle Satellite Cultured Cells	--
18	chr13:50434000-50434200	Enhancers	A549	lung
19	chr13:50434000-50438200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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