Variant report

Variant	rs4245352
Chromosome Location	chr13:50421340-50421341
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:50365341..50367203-chr13:50419576..50422274,3	MCF-7	breast:
2	chr13:50365342..50367960-chr13:50420871..50422430,2	K562	blood:
3	chr13:50411667..50415006-chr13:50418421..50422258,4	K562	blood:
4	chr13:50403150..50405801-chr13:50420228..50422990,2	MCF-7	breast:
5	chr13:50406595..50409291-chr13:50419692..50421695,2	MCF-7	breast:
6	chr13:50420967..50423677-chr13:50509145..50511469,2	K562	blood:
7	chr13:50243856..50246257-chr13:50421112..50423233,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000102753	Chromatin interaction
ENSG00000123178	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11616903	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12862225	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1322630	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1322631	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2025225	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2146307	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2146309	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2181270	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2407704	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2407876	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3851168	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4341664	0.84[AMR][1000 genomes]
rs4476074	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4941660	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4941661	0.86[ASN][1000 genomes]
rs4941662	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4941663	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4942882	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4942883	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4942884	0.82[AMR][1000 genomes]
rs7320463	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7321520	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7322624	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7327735	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7329943	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7330319	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7330526	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7491213	0.83[ASN][1000 genomes]
rs927483	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs927484	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9526608	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526609	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9526610	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9535372	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9535373	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9535374	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9535375	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9535376	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9535377	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9535379	0.97[ASN][1000 genomes]
rs9535381	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:50411400-50422000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr13:50413000-50421600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr13:50415400-50421600	Weak transcription	HepG2	liver
4	chr13:50415400-50421800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr13:50415600-50421800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr13:50417600-50421800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr13:50418800-50421800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr13:50418800-50421800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr13:50418800-50421800	Weak transcription	NHDF-Ad	bronchial
10	chr13:50420600-50422000	Enhancers	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links