Variant report

Variant	rs4942884
Chromosome Location	chr13:50432043-50432044
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:50430972..50433386-chr13:50438652..50441388,2	MCF-7	breast:
2	chr13:50430242..50432524-chr13:50653795..50656545,2	MCF-7	breast:
3	chr13:50430772..50432982-chr13:50438939..50441863,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000176124	Chromatin interaction
ENSG00000231607	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11616903	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12862225	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1322630	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1322631	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2025225	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2146307	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2146309	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2181270	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2407704	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2407876	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3851168	0.84[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs4245352	0.82[AMR][1000 genomes]
rs4476074	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4941660	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4941662	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4941663	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4942882	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4942883	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7320463	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7321520	0.81[EUR][1000 genomes]
rs7322624	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7327735	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7329943	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7330319	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7330526	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs927483	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs927484	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9526608	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9526609	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9526610	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9535372	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9535373	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9535374	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9535375	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9535376	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9535381	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:50422200-50436600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr13:50431000-50433000	Enhancers	Muscle Satellite Cultured Cells	--
3	chr13:50431200-50432400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr13:50431200-50433800	Enhancers	NHLF	lung
5	chr13:50431200-50434600	Enhancers	HMEC	breast
6	chr13:50431400-50432400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr13:50431400-50432400	Flanking Active TSS	HepG2	liver
8	chr13:50431400-50432800	Enhancers	Pancreas	Pancrea
9	chr13:50431400-50433600	Flanking Active TSS	Liver	Liver
10	chr13:50431400-50434000	Enhancers	Hela-S3	cervix
11	chr13:50431400-50434000	Enhancers	HSMM	muscle
12	chr13:50431400-50434200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr13:50431400-50434200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr13:50431600-50432400	Weak transcription	Placenta	Placenta
15	chr13:50431600-50432600	Enhancers	NH-A	brain
16	chr13:50431600-50433400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr13:50431600-50433400	Enhancers	Osteobl	bone
18	chr13:50431600-50434200	Enhancers	NHDF-Ad	bronchial
19	chr13:50431600-50434600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr13:50431800-50432200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr13:50431800-50433200	Active TSS	A549	lung
22	chr13:50432000-50432200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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