Variant report

Variant	rs7320463
Chromosome Location	chr13:50421825-50421826
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr13:50365341..50367203-chr13:50419576..50422274,3	MCF-7	breast:
2	chr13:50223077..50223615-chr13:50421808..50422802,2	K562	blood:
3	chr13:50421820..50422768-chr13:50509785..50510743,4	MCF-7	breast:
4	chr13:50226483..50227196-chr13:50421637..50422391,2	MCF-7	breast:
5	chr13:50365342..50367960-chr13:50420871..50422430,2	K562	blood:
6	chr13:50243658..50244532-chr13:50421679..50422537,5	MCF-7	breast:
7	chr13:50411667..50415006-chr13:50418421..50422258,4	K562	blood:
8	chr13:50403150..50405801-chr13:50420228..50422990,2	MCF-7	breast:
9	chr13:50420967..50423677-chr13:50509145..50511469,2	K562	blood:
10	chr13:50421554..50424015-chr13:50696890..50698594,2	K562	blood:
11	chr13:50243856..50246257-chr13:50421112..50423233,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000102753	Chromatin interaction
ENSG00000123178	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11616903	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12862225	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1322630	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1322631	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1923661	1.00[JPT][hapmap]
rs2025225	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2146307	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2146309	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2181270	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2407704	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2407876	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3851168	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4245352	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4341664	0.81[AMR][1000 genomes]
rs4476074	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4941660	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4941661	0.86[ASN][1000 genomes]
rs4941662	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4941663	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4942882	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4942883	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4942884	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6561564	1.00[JPT][hapmap]
rs716371	1.00[JPT][hapmap]
rs7321520	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7322624	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7327735	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7329943	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7330319	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7330526	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7491213	0.83[ASN][1000 genomes]
rs927483	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs927484	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9526608	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526609	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9526610	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9535372	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9535373	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9535374	0.96[CEU][hapmap];1.00[CHB][hapmap];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9535375	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9535376	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9535377	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9535379	0.97[ASN][1000 genomes]
rs9535381	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:50411400-50422000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr13:50420600-50422000	Enhancers	K562	blood
3	chr13:50421600-50422000	Flanking Active TSS	HepG2	liver
4	chr13:50421800-50422000	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
5	chr13:50421800-50422000	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
6	chr13:50421800-50422000	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr13:50421800-50422000	Enhancers	Primary B cells from cord blood	blood
8	chr13:50421800-50422000	Bivalent Enhancer	Primary B cells from peripheral blood	blood
9	chr13:50421800-50422000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
10	chr13:50421800-50422000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr13:50421800-50422000	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
12	chr13:50421800-50422000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr13:50421800-50422000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr13:50421800-50422000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr13:50421800-50422000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr13:50421800-50422000	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr13:50421800-50422000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr13:50421800-50422000	Enhancers	Colonic Mucosa	Colon
19	chr13:50421800-50422000	Enhancers	Colon Smooth Muscle	Colon
20	chr13:50421800-50422000	Enhancers	Duodenum Mucosa	Duodenum
21	chr13:50421800-50422000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr13:50421800-50422000	Bivalent Enhancer	Fetal Intestine Small	intestine
23	chr13:50421800-50422000	Bivalent Enhancer	Fetal Thymus	thymus
24	chr13:50421800-50422000	Enhancers	Right Ventricle	heart
25	chr13:50421800-50422000	Enhancers	Skeletal Muscle Male	skeletal muscle
26	chr13:50421800-50422000	Enhancers	Skeletal Muscle Female	skeletal muscle
27	chr13:50421800-50422000	Enhancers	Stomach Mucosa	stomach
28	chr13:50421800-50422000	Active TSS	Stomach Smooth Muscle	stomach
29	chr13:50421800-50422000	Bivalent Enhancer	Thymus	Thymus
30	chr13:50421800-50422000	Enhancers	GM12878-XiMat	blood
31	chr13:50421800-50422000	Enhancers	HMEC	breast
32	chr13:50421800-50422000	Enhancers	HUVEC	blood vessel
33	chr13:50421800-50422000	Active TSS	NH-A	brain
34	chr13:50421800-50422000	Enhancers	NHDF-Ad	bronchial
35	chr13:50421800-50422000	Flanking Active TSS	Osteobl	bone
36	chr13:50421800-50422200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
37	chr13:50421800-50422200	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
38	chr13:50421800-50422200	Active TSS	H9 Cell Line	embryonic stem cell
39	chr13:50421800-50422200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr13:50421800-50422200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr13:50421800-50422200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
42	chr13:50421800-50422200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
43	chr13:50421800-50422200	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
44	chr13:50421800-50422200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr13:50421800-50422200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
46	chr13:50421800-50422200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr13:50421800-50422200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr13:50421800-50422200	Enhancers	Fetal Heart	heart
49	chr13:50421800-50422200	Enhancers	Fetal Lung	lung
50	chr13:50421800-50422200	Enhancers	Ovary	ovary

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