Variant report

Variant	rs2025225
Chromosome Location	chr13:50433435-50433436
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:50432796..50435101-chr13:50508743..50511633,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000123178	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs11616903	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11618972	0.86[EUR][1000 genomes]
rs12862225	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1322630	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1322631	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1923661	1.00[JPT][hapmap]
rs2146307	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2146309	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2181270	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2407704	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2407876	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3851168	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4245352	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4341664	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4476074	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4941660	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4941661	0.89[ASN][1000 genomes]
rs4941662	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4941663	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4942882	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4942883	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4942884	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4942885	0.81[AFR][1000 genomes]
rs4942887	0.86[EUR][1000 genomes]
rs55684391	0.86[EUR][1000 genomes]
rs6561564	1.00[JPT][hapmap]
rs7139851	0.86[EUR][1000 genomes]
rs716371	1.00[JPT][hapmap]
rs7320463	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7321520	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7322624	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7327735	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7329943	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7330319	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7330526	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7491213	0.86[ASN][1000 genomes]
rs7983607	0.81[EUR][1000 genomes]
rs927483	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs927484	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526608	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9526609	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9526610	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526613	0.86[EUR][1000 genomes]
rs9526615	0.80[EUR][1000 genomes]
rs9535372	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9535373	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9535374	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9535375	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9535376	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9535377	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9535379	1.00[ASN][1000 genomes]
rs9535381	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9535384	0.86[EUR][1000 genomes]
rs9535385	0.85[EUR][1000 genomes]
rs9535387	0.81[EUR][1000 genomes]

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:50422200-50436600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr13:50431200-50433800	Enhancers	NHLF	lung
3	chr13:50431200-50434600	Enhancers	HMEC	breast
4	chr13:50431400-50433600	Flanking Active TSS	Liver	Liver
5	chr13:50431400-50434000	Enhancers	Hela-S3	cervix
6	chr13:50431400-50434000	Enhancers	HSMM	muscle
7	chr13:50431400-50434200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr13:50431400-50434200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr13:50431600-50434200	Enhancers	NHDF-Ad	bronchial
10	chr13:50431600-50434600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr13:50432200-50433600	Enhancers	Stomach Smooth Muscle	stomach
12	chr13:50432200-50433800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr13:50432200-50434200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr13:50432400-50433800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr13:50432400-50434000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr13:50432400-50434000	Enhancers	HepG2	liver
17	chr13:50432400-50435400	Enhancers	Placenta	Placenta
18	chr13:50432600-50433600	Enhancers	Colon Smooth Muscle	Colon
19	chr13:50432600-50433600	Flanking Active TSS	NH-A	brain
20	chr13:50432800-50434200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr13:50433000-50433800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
22	chr13:50433000-50434000	Enhancers	HSMMtube	muscle
23	chr13:50433200-50434000	Flanking Active TSS	A549	lung
24	chr13:50433200-50434200	Enhancers	Pancreas	Pancrea
25	chr13:50433400-50433800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr13:50433400-50433800	Enhancers	Duodenum Smooth Muscle	Duodenum
27	chr13:50433400-50433800	Flanking Active TSS	Osteobl	bone
28	chr13:50433400-50434000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr13:50433400-50435000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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