Variant report

Variant	rs55684391
Chromosome Location	chr13:50436111-50436112
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs11616903	0.82[EUR][1000 genomes]
rs11618972	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12430447	0.83[AFR][1000 genomes]
rs1322630	0.85[EUR][1000 genomes]
rs1322631	0.85[EUR][1000 genomes]
rs2025225	0.86[EUR][1000 genomes]
rs2146307	0.85[EUR][1000 genomes]
rs2146309	0.85[EUR][1000 genomes]
rs2181270	0.85[EUR][1000 genomes]
rs2407704	0.82[EUR][1000 genomes]
rs2407706	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2407876	0.91[EUR][1000 genomes]
rs4476074	0.87[EUR][1000 genomes]
rs4941660	0.85[EUR][1000 genomes]
rs4941662	0.85[EUR][1000 genomes]
rs4941663	0.85[EUR][1000 genomes]
rs4942882	0.85[EUR][1000 genomes]
rs4942883	0.82[EUR][1000 genomes]
rs4942886	0.83[EUR][1000 genomes]
rs4942887	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7139851	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7322624	0.82[EUR][1000 genomes]
rs7327735	0.80[EUR][1000 genomes]
rs7329943	0.82[EUR][1000 genomes]
rs7330319	0.82[EUR][1000 genomes]
rs7983607	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs927483	0.85[EUR][1000 genomes]
rs927484	0.86[EUR][1000 genomes]
rs9526608	0.81[EUR][1000 genomes]
rs9526609	0.81[EUR][1000 genomes]
rs9526610	0.82[EUR][1000 genomes]
rs9526612	0.81[EUR][1000 genomes]
rs9526613	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9526615	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9535372	0.82[EUR][1000 genomes]
rs9535374	0.82[EUR][1000 genomes]
rs9535375	0.82[EUR][1000 genomes]
rs9535376	0.82[EUR][1000 genomes]
rs9535381	0.86[EUR][1000 genomes]
rs9535384	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9535385	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9535387	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9568339	0.98[ASN][1000 genomes]
rs9568340	0.96[ASN][1000 genomes]
rs9568341	0.97[ASN][1000 genomes]
rs9568342	0.94[ASN][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:50422200-50436600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr13:50434000-50438200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr13:50434200-50442000	Weak transcription	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links