Variant report

Variant	rs11984363
Chromosome Location	chr7:107284566-107284567
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs28401546	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs57179590	0.88[AFR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033979	chr7:107003734-107877761	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv1028571	chr7:107114479-107299723	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv539053	chr7:107114479-107299723	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:107270200-107284600	Weak transcription	Adipose Nuclei	Adipose
2	chr7:107280200-107284800	Weak transcription	Primary B cells from cord blood	blood
3	chr7:107281600-107285200	Enhancers	Fetal Brain Male	brain
4	chr7:107282000-107286600	Enhancers	Fetal Brain Female	brain
5	chr7:107283000-107285200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr7:107283000-107285200	Enhancers	NHDF-Ad	bronchial
7	chr7:107283200-107284600	Enhancers	NHLF	lung
8	chr7:107283200-107285200	Enhancers	Osteobl	bone
9	chr7:107283200-107286000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr7:107283600-107284600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr7:107284000-107284600	Enhancers	HUVEC	blood vessel
12	chr7:107284200-107284600	Enhancers	Fetal Lung	lung
13	chr7:107284200-107284600	Enhancers	GM12878-XiMat	blood
14	chr7:107284200-107285000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr7:107284200-107285600	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr7:107284400-107284600	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr7:107284400-107285000	Enhancers	Fetal Kidney	kidney
18	chr7:107284400-107285200	Enhancers	Primary B cells from peripheral blood	blood
19	chr7:107284400-107285400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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