Variant report

Variant	rs57179590
Chromosome Location	chr7:107272929-107272930
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:107253757..107256527-chr7:107271649..107274387,2	MCF-7	breast:
2	chr7:107272093..107275008-chr7:107277583..107281739,5	K562	blood:
3	chr7:107261469..107264518-chr7:107270573..107273343,3	K562	blood:
4	chr7:107270555..107273086-chr7:107273595..107276120,2	K562	blood:
5	chr7:107272093..107274771-chr7:107278618..107280688,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10085577	1.00[EUR][1000 genomes]
rs10229063	1.00[EUR][1000 genomes]
rs10254184	1.00[EUR][1000 genomes]
rs11984363	0.88[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs2237669	1.00[EUR][1000 genomes]
rs28401546	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28600945	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033979	chr7:107003734-107877761	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv1028571	chr7:107114479-107299723	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv539053	chr7:107114479-107299723	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:107221400-107276000	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr7:107256800-107278600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr7:107261600-107273800	Weak transcription	Fetal Muscle Trunk	muscle
4	chr7:107263000-107273800	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr7:107263600-107276600	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr7:107263800-107273000	Weak transcription	Dnd41	blood
7	chr7:107263800-107278800	Weak transcription	Primary T cells from cord blood	blood
8	chr7:107264200-107278400	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr7:107269800-107275400	Weak transcription	Left Ventricle	heart
10	chr7:107270000-107273200	Weak transcription	Primary B cells from cord blood	blood
11	chr7:107270000-107273600	Weak transcription	Stomach Smooth Muscle	stomach
12	chr7:107270000-107274200	Weak transcription	Aorta	Aorta
13	chr7:107270000-107274200	Weak transcription	Lung	lung
14	chr7:107270000-107274200	Weak transcription	Spleen	Spleen
15	chr7:107270000-107274400	Weak transcription	Right Ventricle	heart
16	chr7:107270000-107283000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr7:107270200-107284600	Weak transcription	Adipose Nuclei	Adipose
18	chr7:107270600-107273200	Weak transcription	Primary B cells from peripheral blood	blood
19	chr7:107270600-107273400	Weak transcription	NHEK	skin
20	chr7:107270800-107273400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr7:107271000-107274200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr7:107271000-107276800	Weak transcription	Fetal Stomach	stomach
23	chr7:107271000-107283200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr7:107272200-107274400	Enhancers	Primary monocytes fromperipheralblood	blood
25	chr7:107272400-107273200	Enhancers	HUES6 Cell Line	embryonic stem cell
26	chr7:107272400-107273400	Enhancers	HUES48 Cell Line	embryonic stem cell
27	chr7:107272400-107273400	Enhancers	iPS-18 Cell Line	embryonic stem cell
28	chr7:107272400-107273600	Weak transcription	Monocytes-CD14+_RO01746	blood
29	chr7:107272600-107273000	Enhancers	H9 Cell Line	embryonic stem cell
30	chr7:107272600-107281600	Weak transcription	Fetal Brain Male	brain
31	chr7:107272800-107273000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr7:107272800-107273200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr7:107272800-107273400	Enhancers	iPS-20b Cell Line	embryonic stem cell

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