Variant report

Variant	rs10229063
Chromosome Location	chr7:107099568-107099569
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:106807301..106811350-chr7:107096211..107100260,4	K562	blood:
2	chr7:106780093..106782800-chr7:107098466..107101440,2	K562	blood:

Variant related genes	Relation type
ENSG00000105856	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10085577	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10215540	0.87[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs10215868	1.00[EUR][1000 genomes]
rs10243682	0.82[AFR][1000 genomes]
rs10250249	0.85[ASN][1000 genomes]
rs10254184	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10953542	1.00[GIH][hapmap];1.00[TSI][hapmap]
rs11978198	1.00[EUR][1000 genomes]
rs2237669	1.00[EUR][1000 genomes]
rs28401546	1.00[EUR][1000 genomes]
rs28480617	0.85[ASN][1000 genomes]
rs28688086	1.00[EUR][1000 genomes]
rs3801951	0.89[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs57179590	1.00[EUR][1000 genomes]
rs57726748	0.94[ASN][1000 genomes]
rs6954309	1.00[CHB][hapmap];0.92[JPT][hapmap];0.81[YRI][hapmap];0.97[ASN][1000 genomes]
rs72494494	0.97[ASN][1000 genomes]
rs73187346	0.85[ASN][1000 genomes]
rs73187350	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1825788	chr7:106897237-107136320	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1024793	chr7:106900877-107170312	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	esv1832266	chr7:106961882-107136320	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv1033979	chr7:107003734-107877761	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
5	nsv1019963	chr7:107033342-107188641	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
6	nsv539052	chr7:107033342-107188641	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10229063	RGS20	trans	lymphoblastoid	seeQTL

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:107028200-107103800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr7:107035800-107133000	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr7:107037800-107102200	Weak transcription	Ovary	ovary
4	chr7:107038800-107100600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr7:107050600-107102400	Weak transcription	Dnd41	blood
6	chr7:107050800-107100200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr7:107052600-107126400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr7:107065000-107100600	Weak transcription	Thymus	Thymus
9	chr7:107067600-107119800	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr7:107068400-107104000	Weak transcription	Pancreas	Pancrea
11	chr7:107072400-107100000	Weak transcription	Gastric	stomach
12	chr7:107073000-107103600	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr7:107076200-107099600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr7:107079600-107108600	Weak transcription	Right Ventricle	heart
15	chr7:107080400-107099800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr7:107081000-107102600	Weak transcription	Stomach Smooth Muscle	stomach
17	chr7:107081200-107103600	Weak transcription	Adipose Nuclei	Adipose
18	chr7:107082000-107100600	Weak transcription	Esophagus	oesophagus
19	chr7:107082800-107101000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr7:107082800-107104200	Weak transcription	Left Ventricle	heart
21	chr7:107082800-107109000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr7:107083400-107104200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr7:107083400-107104600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr7:107083400-107115400	Weak transcription	Primary hematopoietic stem cells	blood
25	chr7:107084400-107109200	Weak transcription	Fetal Intestine Large	intestine
26	chr7:107085400-107101600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr7:107087600-107100800	Weak transcription	Spleen	Spleen
28	chr7:107087600-107103600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr7:107087600-107104000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr7:107087800-107103400	Weak transcription	Aorta	Aorta
31	chr7:107087800-107103600	Weak transcription	K562	blood
32	chr7:107087800-107112000	Weak transcription	NHDF-Ad	bronchial
33	chr7:107088000-107103600	Weak transcription	HSMMtube	muscle
34	chr7:107088000-107103800	Weak transcription	HMEC	breast
35	chr7:107088000-107103800	Weak transcription	NHEK	skin
36	chr7:107088200-107100800	Weak transcription	Liver	Liver
37	chr7:107088600-107126000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr7:107089400-107100000	Weak transcription	Fetal Muscle Leg	muscle
39	chr7:107090000-107114600	Weak transcription	Primary T cells from cord blood	blood
40	chr7:107090800-107104800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr7:107090800-107146000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr7:107091000-107145800	Weak transcription	Primary T cells fromperipheralblood	blood
43	chr7:107091600-107104000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr7:107091800-107103400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr7:107094400-107103600	Weak transcription	HUVEC	blood vessel
46	chr7:107094400-107103800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr7:107096800-107100000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
48	chr7:107097000-107112200	Weak transcription	Fetal Lung	lung
49	chr7:107097400-107103400	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr7:107097400-107104400	Weak transcription	Fetal Stomach	stomach

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