Variant report

Variant	rs10085577
Chromosome Location	chr7:107132267-107132268
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:107132036..107135481-chr7:107143415..107147537,5	K562	blood:
2	chr7:107125496..107128827-chr7:107131935..107133783,3	K562	blood:
3	chr7:107130214..107132794-chr7:107133804..107135614,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10215540	0.91[ASN][1000 genomes]
rs10215868	1.00[EUR][1000 genomes]
rs10229063	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10250249	0.82[ASN][1000 genomes]
rs10254184	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11978198	1.00[EUR][1000 genomes]
rs2237669	1.00[EUR][1000 genomes]
rs28401546	1.00[EUR][1000 genomes]
rs28480617	0.82[ASN][1000 genomes]
rs28688086	1.00[EUR][1000 genomes]
rs3801951	0.87[ASN][1000 genomes]
rs57179590	1.00[EUR][1000 genomes]
rs57726748	0.91[ASN][1000 genomes]
rs6954309	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72494494	1.00[ASN][1000 genomes]
rs73187346	0.82[ASN][1000 genomes]
rs73187350	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1825788	chr7:106897237-107136320	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1024793	chr7:106900877-107170312	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	esv1832266	chr7:106961882-107136320	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv1033979	chr7:107003734-107877761	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
5	nsv1019963	chr7:107033342-107188641	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
6	nsv539052	chr7:107033342-107188641	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
7	nsv1028571	chr7:107114479-107299723	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
8	nsv539053	chr7:107114479-107299723	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
9	nsv482365	chr7:107122401-107271861	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:107035800-107133000	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr7:107090800-107146000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr7:107091000-107145800	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr7:107098800-107132600	Weak transcription	Primary B cells from cord blood	blood
5	chr7:107112800-107145800	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr7:107115400-107132800	Weak transcription	Primary T cells from cord blood	blood
7	chr7:107115600-107135200	Weak transcription	Left Ventricle	heart
8	chr7:107120000-107145600	Weak transcription	Right Ventricle	heart
9	chr7:107120200-107135200	Weak transcription	Fetal Intestine Small	intestine
10	chr7:107122000-107147000	Weak transcription	HSMM	muscle
11	chr7:107123200-107155800	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr7:107123600-107166200	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr7:107126600-107135600	Weak transcription	Pancreas	Pancrea
14	chr7:107126600-107145600	Weak transcription	Adipose Nuclei	Adipose
15	chr7:107126800-107184800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr7:107127400-107175400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr7:107130800-107145400	Weak transcription	Primary B cells from peripheral blood	blood
18	chr7:107130800-107163400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr7:107131400-107135400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr7:107131400-107179800	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr7:107131600-107132400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr7:107131800-107133000	Weak transcription	Fetal Heart	heart
23	chr7:107131800-107146000	Weak transcription	Dnd41	blood
24	chr7:107131800-107175000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
25	chr7:107132000-107146200	Weak transcription	Colonic Mucosa	Colon
26	chr7:107132000-107146800	Weak transcription	Fetal Thymus	thymus
27	chr7:107132200-107146400	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr7:107132200-107146800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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