Variant report

Variant	rs11978198
Chromosome Location	chr7:106998849-106998850
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:106998806..107000334-chr7:107005300..107008235,2	K562	blood:
2	chr7:106992860..106994930-chr7:106997607..106999278,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10085577	1.00[EUR][1000 genomes]
rs10215868	1.00[EUR][1000 genomes]
rs10229063	1.00[EUR][1000 genomes]
rs10254184	1.00[EUR][1000 genomes]
rs11976666	1.00[YRI][hapmap]
rs2237669	1.00[EUR][1000 genomes]
rs28688086	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3383027	chr7:106802625-107096474	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv888939	chr7:106849393-107045700	ZNF genes & repeats Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
3	esv1825788	chr7:106897237-107136320	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv1024793	chr7:106900877-107170312	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv608073	chr7:106960515-107063686	Strong transcription ZNF genes & repeats Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	esv1832266	chr7:106961882-107136320	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:106888800-106999400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr7:106923800-106999400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr7:106946200-106999800	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr7:106946400-106999400	Weak transcription	Pancreas	Pancrea
5	chr7:106953800-106999400	Weak transcription	Left Ventricle	heart
6	chr7:106967800-106999800	Weak transcription	Fetal Heart	heart
7	chr7:106974600-106999400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr7:106982400-106999800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr7:106984000-106999800	Weak transcription	Aorta	Aorta
10	chr7:106984400-107006200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr7:106984800-106999200	Weak transcription	Primary B cells from cord blood	blood
12	chr7:106985200-106999400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr7:106985200-106999400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr7:106985200-106999400	Weak transcription	Fetal Intestine Small	intestine
15	chr7:106985600-106999000	Weak transcription	Dnd41	blood
16	chr7:106986000-107013200	Weak transcription	Small Intestine	intestine
17	chr7:106989200-107018800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr7:106990200-107000400	Weak transcription	HMEC	breast
19	chr7:106990400-107000600	Weak transcription	Hela-S3	cervix
20	chr7:106990800-107000000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr7:106991200-107000000	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chr7:106991400-107000400	Weak transcription	Psoas Muscle	Psoas
23	chr7:106992800-106999800	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr7:106993200-106999400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr7:106993400-106999000	Weak transcription	Duodenum Mucosa	Duodenum
26	chr7:106993400-107000200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr7:106993600-106999600	Weak transcription	Ovary	ovary
28	chr7:106993600-106999800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr7:106993800-107000200	Weak transcription	HepG2	liver
30	chr7:106994200-106999200	Weak transcription	Primary monocytes fromperipheralblood	blood
31	chr7:106994800-107000200	Weak transcription	Fetal Lung	lung
32	chr7:106995200-106999200	Weak transcription	Primary hematopoietic stem cells	blood
33	chr7:106995200-106999600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr7:106995400-106999600	Weak transcription	Liver	Liver
35	chr7:106996000-106999800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr7:106996200-106999800	Weak transcription	Brain Anterior Caudate	brain
37	chr7:106996200-107000000	Weak transcription	Brain Angular Gyrus	brain
38	chr7:106996200-107000200	Weak transcription	HSMMtube	muscle
39	chr7:106996200-107000200	Weak transcription	NH-A	brain
40	chr7:106996400-106999000	Weak transcription	Brain Hippocampus Middle	brain
41	chr7:106996400-106999400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr7:106996400-106999600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr7:106996400-106999600	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr7:106996400-106999600	Weak transcription	NHLF	lung
45	chr7:106996400-106999800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr7:106996400-106999800	Weak transcription	Brain Cingulate Gyrus	brain
47	chr7:106996400-107000200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr7:106996400-107000200	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr7:106996400-107000400	Weak transcription	NHDF-Ad	bronchial
50	chr7:106996400-107003000	Weak transcription	Placenta Amnion	Placenta Amnion

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