Variant report

Variant	rs28600945
Chromosome Location	chr7:107257490-107257491
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:107249634..107253526-chr7:107253696..107258280,6	K562	blood:
2	chr7:107223715..107226162-chr7:107257226..107259439,2	K562	blood:

Variant related genes	Relation type
ENSG00000075790	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs28401546	0.89[AFR][1000 genomes]
rs57179590	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033979	chr7:107003734-107877761	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv1028571	chr7:107114479-107299723	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv539053	chr7:107114479-107299723	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv482365	chr7:107122401-107271861	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
5	nsv608074	chr7:107179131-107260856	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:107221200-107272000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr7:107221400-107272400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr7:107221400-107276000	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr7:107222400-107258200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr7:107227800-107265400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr7:107235200-107271800	Weak transcription	Small Intestine	intestine
7	chr7:107235800-107268200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr7:107236000-107262800	Weak transcription	GM12878-XiMat	blood
9	chr7:107236000-107270800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr7:107238000-107272000	Weak transcription	Esophagus	oesophagus
11	chr7:107242000-107258600	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr7:107242400-107259200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr7:107242400-107260200	Weak transcription	Colonic Mucosa	Colon
14	chr7:107246200-107261200	Weak transcription	Right Ventricle	heart
15	chr7:107250800-107259400	Weak transcription	Stomach Mucosa	stomach
16	chr7:107251400-107261400	Strong transcription	HUVEC	blood vessel
17	chr7:107251600-107261600	Weak transcription	Fetal Heart	heart
18	chr7:107253200-107262200	Strong transcription	Monocytes-CD14+_RO01746	blood
19	chr7:107253400-107258200	Strong transcription	Placenta	Placenta
20	chr7:107253400-107258800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr7:107253600-107257600	Strong transcription	Fetal Muscle Leg	muscle
22	chr7:107253600-107258000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
23	chr7:107253600-107258200	Strong transcription	Primary neutrophils fromperipheralblood	blood
24	chr7:107253800-107257600	Strong transcription	Primary monocytes fromperipheralblood	blood
25	chr7:107253800-107257600	Strong transcription	Primary hematopoietic stem cells	blood
26	chr7:107253800-107257600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr7:107253800-107257600	Strong transcription	Ovary	ovary
28	chr7:107253800-107257800	Strong transcription	Brain Anterior Caudate	brain
29	chr7:107253800-107257800	Strong transcription	Skeletal Muscle Female	skeletal muscle
30	chr7:107253800-107258200	Strong transcription	Fetal Muscle Trunk	muscle
31	chr7:107254000-107257600	Strong transcription	Fetal Lung	lung
32	chr7:107254000-107257600	Strong transcription	Rectal Mucosa Donor 29	rectum
33	chr7:107254000-107257800	Strong transcription	Duodenum Smooth Muscle	Duodenum
34	chr7:107254200-107257600	Strong transcription	Colon Smooth Muscle	Colon
35	chr7:107254200-107258000	Strong transcription	Liver	Liver
36	chr7:107254400-107257600	Strong transcription	Fetal Stomach	stomach
37	chr7:107254400-107258000	Strong transcription	Left Ventricle	heart
38	chr7:107254600-107264400	Weak transcription	HSMMtube	muscle
39	chr7:107254800-107262600	Weak transcription	Gastric	stomach
40	chr7:107255000-107258000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr7:107255000-107258600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr7:107255000-107259600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr7:107255200-107257600	Strong transcription	Fetal Intestine Small	intestine
44	chr7:107255200-107260200	Weak transcription	HepG2	liver
45	chr7:107255200-107265000	Weak transcription	Hela-S3	cervix
46	chr7:107255400-107258400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr7:107255400-107261400	Weak transcription	NHLF	lung
48	chr7:107255400-107262000	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr7:107255400-107271600	Weak transcription	Pancreas	Pancrea
50	chr7:107255600-107261000	Weak transcription	Rectal Mucosa Donor 31	rectum

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