Variant report

Variant	rs11985151
Chromosome Location	chr8:105211967-105211968
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10087022	0.87[ASN][1000 genomes]
rs11985239	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11997479	1.00[ASN][1000 genomes]
rs16871008	0.87[ASN][1000 genomes]
rs3808399	1.00[JPT][hapmap]
rs56408627	0.87[ASN][1000 genomes]
rs57117148	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57637112	0.87[ASN][1000 genomes]
rs7012041	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73301323	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73301327	1.00[ASN][1000 genomes]
rs73301365	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73301384	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73699081	0.87[ASN][1000 genomes]
rs7825885	0.82[AFR][1000 genomes]
rs7836089	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1847227	chr8:105025912-105251147	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv891251	chr8:105054446-105283340	Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
3	nsv891252	chr8:105106882-105227985	Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv831416	chr8:105137789-105296965	Flanking Active TSS Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
5	esv2762762	chr8:105189986-105247833	Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:105210400-105213600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr8:105210800-105213200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr8:105210800-105214000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr8:105211400-105212000	Enhancers	HMEC	breast
5	chr8:105211400-105213200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr8:105211400-105213200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr8:105211600-105213200	Enhancers	Placenta Amnion	Placenta Amnion
8	chr8:105211800-105212200	Enhancers	Muscle Satellite Cultured Cells	--
9	chr8:105211800-105212400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr8:105211800-105212400	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr8:105211800-105212400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr8:105211800-105212400	Enhancers	NH-A	brain
13	chr8:105211800-105212400	Flanking Active TSS	NHEK	skin
14	chr8:105211800-105213200	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr8:105211800-105213200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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