Variant report

Variant	rs16871008
Chromosome Location	chr8:105155544-105155545
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10087022	1.00[ASN][1000 genomes]
rs10089678	0.89[AFR][1000 genomes]
rs10094163	0.88[AFR][1000 genomes]
rs10102115	1.00[EUR][1000 genomes]
rs11985151	0.87[ASN][1000 genomes]
rs11985239	0.87[ASN][1000 genomes]
rs11988925	1.00[EUR][1000 genomes]
rs11993634	1.00[EUR][1000 genomes]
rs11994300	1.00[EUR][1000 genomes]
rs11997479	0.87[ASN][1000 genomes]
rs13280836	0.89[AFR][1000 genomes]
rs2340768	0.90[AFR][1000 genomes]
rs28639558	0.88[AFR][1000 genomes]
rs28783218	0.87[AFR][1000 genomes]
rs3808399	1.00[JPT][hapmap]
rs56408627	1.00[ASN][1000 genomes]
rs57117148	0.87[ASN][1000 genomes]
rs57637112	1.00[ASN][1000 genomes]
rs7012041	0.87[ASN][1000 genomes]
rs73299443	1.00[EUR][1000 genomes]
rs73299455	1.00[EUR][1000 genomes]
rs73299456	1.00[EUR][1000 genomes]
rs73301323	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73301327	0.87[ASN][1000 genomes]
rs73301365	0.87[ASN][1000 genomes]
rs73301384	0.87[ASN][1000 genomes]
rs73699081	1.00[ASN][1000 genomes]
rs7836089	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031195	chr8:104601231-105194208	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
2	esv1847227	chr8:105025912-105251147	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv891251	chr8:105054446-105283340	Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
4	nsv891252	chr8:105106882-105227985	Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv1818798	chr8:105125672-105155544	Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv831416	chr8:105137789-105296965	Flanking Active TSS Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:105150600-105155600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:105151600-105160800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr8:105155200-105155800	Enhancers	A549	lung
4	chr8:105155200-105156400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr8:105155400-105156000	Enhancers	HMEC	breast
6	chr8:105155400-105156400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr8:105155400-105156800	Enhancers	NHEK	skin

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