Variant report
| Variant | rs11985641 |
|---|---|
| Chromosome Location | chr8:2281867-2281868 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:2273693..2275331-chr8:2281704..2283828,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:34)
| rs_ID | r2[population] |
|---|---|
| rs10101831 | 1.00[ASN][1000 genomes] |
| rs11990285 | 1.00[ASN][1000 genomes] |
| rs13266225 | 1.00[ASN][1000 genomes] |
| rs13276984 | 1.00[ASN][1000 genomes] |
| rs1455642 | 1.00[ASN][1000 genomes] |
| rs1455643 | 1.00[ASN][1000 genomes] |
| rs1677779 | 1.00[ASN][1000 genomes] |
| rs17064827 | 1.00[ASN][1000 genomes] |
| rs17070604 | 1.00[ASN][1000 genomes] |
| rs2607667 | 1.00[ASN][1000 genomes] |
| rs2618837 | 1.00[ASN][1000 genomes] |
| rs315234 | 1.00[ASN][1000 genomes] |
| rs34068272 | 1.00[ASN][1000 genomes] |
| rs34756611 | 1.00[ASN][1000 genomes] |
| rs35169761 | 0.95[EUR][1000 genomes] |
| rs35399556 | 1.00[ASN][1000 genomes] |
| rs35497453 | 1.00[ASN][1000 genomes] |
| rs35498486 | 1.00[ASN][1000 genomes] |
| rs35646845 | 1.00[ASN][1000 genomes] |
| rs36088292 | 1.00[ASN][1000 genomes] |
| rs4452813 | 1.00[ASN][1000 genomes] |
| rs56781377 | 1.00[ASN][1000 genomes] |
| rs6558654 | 1.00[ASN][1000 genomes] |
| rs66502377 | 1.00[ASN][1000 genomes] |
| rs7007817 | 1.00[ASN][1000 genomes] |
| rs71519862 | 1.00[ASN][1000 genomes] |
| rs71519863 | 1.00[ASN][1000 genomes] |
| rs71519864 | 1.00[ASN][1000 genomes] |
| rs7812858 | 1.00[ASN][1000 genomes] |
| rs7812885 | 1.00[ASN][1000 genomes] |
| rs7816548 | 1.00[ASN][1000 genomes] |
| rs7833738 | 1.00[ASN][1000 genomes] |
| rs7844153 | 1.00[ASN][1000 genomes] |
| rs930843 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv889712 | chr8:1591412-2337777 | Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 22 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:2278800-2283000 | Weak transcription | H9 Cell Line | embryonic stem cell |
