Variant report

Variant	rs11986439
Chromosome Location	chr8:110601162-110601163
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:110599959..110602833-chr8:110655392..110657661,3	MCF-7	breast:
2	chr8:110584567..110587169-chr8:110600122..110601656,2	K562	blood:
3	chr8:110595213..110597176-chr8:110600323..110601967,2	MCF-7	breast:
4	chr8:110601011..110602738-chr8:110605572..110607359,2	K562	blood:
5	chr8:110599166..110601638-chr8:110601697..110603770,2	MCF-7	breast:
6	chr8:110600715..110602433-chr8:110604852..110607355,2	MCF-7	breast:
7	chr8:110599717..110603274-chr8:110604163..110606425,3	MCF-7	breast:
8	chr8:110591024..110592683-chr8:110599312..110601179,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000147642	Chromatin interaction
ENSG00000248050	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10103079	0.94[EUR][1000 genomes]
rs10105602	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1849702	chr8:110594148-110683804	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:110553800-110613000	Weak transcription	NHLF	lung
2	chr8:110583800-110601600	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr8:110587800-110605800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr8:110588200-110601600	Weak transcription	Left Ventricle	heart
5	chr8:110589800-110601600	Weak transcription	Right Atrium	heart
6	chr8:110590000-110605600	Weak transcription	K562	blood
7	chr8:110590200-110654800	Weak transcription	Lung	lung
8	chr8:110591200-110601600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr8:110591600-110601600	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr8:110591600-110609400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr8:110592000-110601400	Weak transcription	Brain Angular Gyrus	brain
12	chr8:110592200-110601600	Weak transcription	NHEK	skin
13	chr8:110592200-110604600	Weak transcription	Gastric	stomach
14	chr8:110592400-110601800	Weak transcription	Brain Germinal Matrix	brain
15	chr8:110593600-110601400	Weak transcription	HMEC	breast
16	chr8:110594800-110606000	Weak transcription	Fetal Brain Male	brain
17	chr8:110595600-110601600	Weak transcription	Psoas Muscle	Psoas
18	chr8:110596200-110601600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr8:110596200-110601600	Weak transcription	Fetal Muscle Leg	muscle
20	chr8:110596800-110608400	Enhancers	Fetal Intestine Large	intestine
21	chr8:110597200-110601400	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr8:110597800-110601400	Weak transcription	Adipose Nuclei	Adipose
23	chr8:110597800-110608400	Enhancers	Fetal Intestine Small	intestine
24	chr8:110598200-110601600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr8:110598400-110601600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr8:110598400-110602800	Enhancers	Liver	Liver
27	chr8:110598400-110605800	Weak transcription	Fetal Brain Female	brain
28	chr8:110598400-110607800	Weak transcription	Esophagus	oesophagus
29	chr8:110598600-110601400	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr8:110598600-110601600	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr8:110598600-110601800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr8:110598600-110603600	Enhancers	Duodenum Mucosa	Duodenum
33	chr8:110598800-110601400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr8:110598800-110601400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr8:110598800-110601400	Weak transcription	Brain Cingulate Gyrus	brain
36	chr8:110598800-110601400	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr8:110598800-110601400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr8:110598800-110601600	Weak transcription	Brain Anterior Caudate	brain
39	chr8:110598800-110605400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr8:110598800-110615000	Weak transcription	Ovary	ovary
41	chr8:110599000-110601400	Weak transcription	Brain Hippocampus Middle	brain
42	chr8:110599400-110603200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr8:110599600-110602400	Enhancers	Colon Smooth Muscle	Colon
44	chr8:110599800-110603400	Enhancers	Hela-S3	cervix
45	chr8:110600000-110601600	Enhancers	A549	lung
46	chr8:110600000-110603200	Enhancers	Pancreatic Islets	Pancreatic Islet
47	chr8:110600000-110605000	Weak transcription	Colonic Mucosa	Colon
48	chr8:110600200-110601400	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr8:110600200-110604600	Weak transcription	Pancreas	Pancrea
50	chr8:110600600-110601600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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