Variant report

Variant	rs10105602
Chromosome Location	chr8:110597089-110597090
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:110551964..110555070-chr8:110593692..110597426,3	K562	blood:
2	chr8:110572165..110574354-chr8:110595418..110597948,2	MCF-7	breast:
3	chr8:110595213..110597176-chr8:110600323..110601967,2	MCF-7	breast:
4	chr8:110595759..110598292-chr8:110656229..110657746,2	MCF-7	breast:
5	chr8:110588060..110591053-chr8:110594927..110598515,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000248050	Chromatin interaction
ENSG00000147654	Chromatin interaction
ENSG00000147642	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10092211	1.00[CEU][hapmap]
rs10092626	1.00[CEU][hapmap]
rs10096439	1.00[CEU][hapmap]
rs10098728	1.00[CEU][hapmap]
rs10103079	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10105594	1.00[CEU][hapmap]
rs10107091	1.00[CEU][hapmap]
rs10111721	1.00[CEU][hapmap]
rs11986439	0.94[EUR][1000 genomes]
rs11987659	1.00[CEU][hapmap]
rs11988264	1.00[CEU][hapmap]
rs16879807	1.00[CEU][hapmap]
rs16879840	1.00[CEU][hapmap]
rs16879862	1.00[CEU][hapmap]
rs16879869	1.00[CEU][hapmap]
rs2168677	1.00[CEU][hapmap]
rs4506181	1.00[CEU][hapmap]
rs60319372	0.83[AFR][1000 genomes]
rs7841022	1.00[CEU][hapmap]
rs9297431	1.00[CEU][hapmap]
rs9774677	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1849702	chr8:110594148-110683804	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:110553800-110613000	Weak transcription	NHLF	lung
2	chr8:110583800-110601600	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr8:110586000-110598800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr8:110587800-110605800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr8:110588000-110600600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr8:110588200-110598200	Weak transcription	Ovary	ovary
7	chr8:110588200-110601600	Weak transcription	Left Ventricle	heart
8	chr8:110589200-110598600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
9	chr8:110589800-110598000	Weak transcription	Brain Substantia Nigra	brain
10	chr8:110589800-110598200	Weak transcription	Brain Cingulate Gyrus	brain
11	chr8:110589800-110601600	Weak transcription	Right Atrium	heart
12	chr8:110590000-110597800	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr8:110590000-110605600	Weak transcription	K562	blood
14	chr8:110590200-110654800	Weak transcription	Lung	lung
15	chr8:110590800-110597800	Weak transcription	Brain Hippocampus Middle	brain
16	chr8:110591200-110601600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr8:110591600-110597600	Weak transcription	Colonic Mucosa	Colon
18	chr8:110591600-110598400	Weak transcription	Right Ventricle	heart
19	chr8:110591600-110599400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr8:110591600-110601600	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr8:110591600-110609400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr8:110591800-110598200	Weak transcription	Fetal Stomach	stomach
23	chr8:110592000-110601400	Weak transcription	Brain Angular Gyrus	brain
24	chr8:110592200-110597400	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr8:110592200-110601600	Weak transcription	NHEK	skin
26	chr8:110592200-110604600	Weak transcription	Gastric	stomach
27	chr8:110592400-110597600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr8:110592400-110601800	Weak transcription	Brain Germinal Matrix	brain
29	chr8:110593200-110598600	Strong transcription	Cortex derived primary cultured neurospheres	brain
30	chr8:110593400-110597600	Weak transcription	Esophagus	oesophagus
31	chr8:110593600-110601400	Weak transcription	HMEC	breast
32	chr8:110594200-110598200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr8:110594600-110598800	Enhancers	Pancreas	Pancrea
34	chr8:110594800-110598400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr8:110594800-110606000	Weak transcription	Fetal Brain Male	brain
36	chr8:110595400-110597400	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr8:110595600-110597600	Weak transcription	Stomach Smooth Muscle	stomach
38	chr8:110595600-110598000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr8:110595600-110601600	Weak transcription	Psoas Muscle	Psoas
40	chr8:110595800-110597200	Enhancers	Liver	Liver
41	chr8:110595800-110597800	Genic enhancers	Fetal Intestine Small	intestine
42	chr8:110596000-110597200	Enhancers	Muscle Satellite Cultured Cells	--
43	chr8:110596000-110597600	Enhancers	HepG2	liver
44	chr8:110596000-110597800	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr8:110596200-110597200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
46	chr8:110596200-110598200	Enhancers	Small Intestine	intestine
47	chr8:110596200-110601600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr8:110596200-110601600	Weak transcription	Fetal Muscle Leg	muscle
49	chr8:110596400-110597800	Strong transcription	Adipose Nuclei	Adipose
50	chr8:110596400-110598000	Enhancers	A549	lung

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