Variant report

Variant	rs9774677
Chromosome Location	chr8:110510993-110510994
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:110510174..110512174-chr8:110514390..110516726,2	K562	blood:
2	chr8:110492411..110494617-chr8:110510142..110512481,2	MCF-7	breast:
3	chr8:110506183..110508052-chr8:110509587..110512256,2	MCF-7	breast:
4	chr8:110510297..110513160-chr8:110550256..110552818,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000147654	Chromatin interaction
ENSG00000205038	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10092211	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs10092626	1.00[CEU][hapmap]
rs10096439	1.00[CEU][hapmap]
rs10098728	1.00[CEU][hapmap]
rs10105594	1.00[CEU][hapmap]
rs10105602	1.00[CEU][hapmap]
rs10107091	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs10111721	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs11987659	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs11988264	1.00[CEU][hapmap]
rs1598751	0.81[YRI][hapmap]
rs16879807	1.00[CEU][hapmap]
rs16879840	1.00[CEU][hapmap]
rs16879862	1.00[CEU][hapmap]
rs16879869	1.00[CEU][hapmap]
rs2168677	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs4506181	1.00[CEU][hapmap]
rs55786960	1.00[EUR][1000 genomes]
rs55881558	1.00[EUR][1000 genomes]
rs55932317	0.91[AFR][1000 genomes]
rs56162009	1.00[EUR][1000 genomes]
rs56224859	1.00[EUR][1000 genomes]
rs57439661	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57909958	1.00[EUR][1000 genomes]
rs61443777	1.00[EUR][1000 genomes]
rs6469264	0.81[YRI][hapmap]
rs73314998	1.00[EUR][1000 genomes]
rs73700604	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73700607	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73700608	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73700609	1.00[EUR][1000 genomes]
rs73700611	1.00[EUR][1000 genomes]
rs73700612	1.00[EUR][1000 genomes]
rs73700630	1.00[EUR][1000 genomes]
rs73700890	1.00[EUR][1000 genomes]
rs73700891	1.00[EUR][1000 genomes]
rs73700892	1.00[EUR][1000 genomes]
rs73700893	1.00[EUR][1000 genomes]
rs73704012	1.00[EUR][1000 genomes]
rs73704013	1.00[EUR][1000 genomes]
rs73704019	1.00[EUR][1000 genomes]
rs73704020	1.00[EUR][1000 genomes]
rs73704024	1.00[EUR][1000 genomes]
rs73704035	1.00[EUR][1000 genomes]
rs73704042	1.00[EUR][1000 genomes]
rs73704043	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73704045	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7841022	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs7842842	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs9297431	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891281	chr8:110450092-110558622	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases
2	esv2554092	chr8:110509394-110511181	Inactive region	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv3428944	chr8:110509626-110511624	Inactive region	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9774677	Hs.171169	cis	multi-tissue	Pritchard

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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