Variant report

Variant	rs55932317
Chromosome Location	chr8:110527556-110527557
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:110526872..110528592-chr8:110535005..110537105,2	K562	blood:
2	chr8:110525800..110528090-chr8:110551913..110554000,2	MCF-7	breast:
3	chr8:110525756..110528832-chr8:110532009..110534427,3	K562	blood:

Variant related genes	Relation type
ENSG00000205038	Chromatin interaction
ENSG00000147654	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10093885	0.92[EUR][1000 genomes]
rs11778756	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11784792	0.82[EUR][1000 genomes]
rs11785973	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13438836	0.83[EUR][1000 genomes]
rs17368044	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17375750	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17445342	0.81[EUR][1000 genomes]
rs17446406	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1892761	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28491535	0.81[EUR][1000 genomes]
rs55800074	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs55959787	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56109503	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56379526	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57439661	0.91[AFR][1000 genomes]
rs59237049	0.92[EUR][1000 genomes]
rs6995033	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72669109	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72669111	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72669122	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72669124	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72669127	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72669129	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72669131	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72684799	0.83[EUR][1000 genomes]
rs72687010	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72687015	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73700604	0.90[AFR][1000 genomes]
rs73700607	0.91[AFR][1000 genomes]
rs73700608	0.91[AFR][1000 genomes]
rs73704043	0.91[AFR][1000 genomes]
rs73704045	0.91[AFR][1000 genomes]
rs7816624	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7817639	0.83[EUR][1000 genomes]
rs7820734	0.83[EUR][1000 genomes]
rs7842842	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9656791	0.81[EUR][1000 genomes]
rs9774677	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891281	chr8:110450092-110558622	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:110526600-110532400	Weak transcription	K562	blood

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