Variant report

Variant	rs10093885
Chromosome Location	chr8:110448635-110448636
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:110443668..110445641-chr8:110448319..110451170,3	K562	blood:
2	chr8:110443668..110447226-chr8:110448028..110451170,4	K562	blood:

Extended variants
information (count: 54 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10100944	0.95[CEU][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.81[TSI][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10108704	1.00[ASN][1000 genomes]
rs11550169	1.00[JPT][hapmap]
rs11778756	0.95[CEU][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11784792	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11785973	0.95[CEU][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13438836	0.94[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1563581	0.83[CEU][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17368044	0.95[CEU][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17375750	0.95[CEU][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.88[EUR][1000 genomes]
rs17445342	0.95[CEU][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.81[TSI][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17446406	0.95[CEU][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1892761	0.83[EUR][1000 genomes]
rs28463252	1.00[ASN][1000 genomes]
rs28491535	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55800074	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55932317	0.92[EUR][1000 genomes]
rs55959787	0.83[EUR][1000 genomes]
rs56109503	0.86[EUR][1000 genomes]
rs56379526	0.86[EUR][1000 genomes]
rs59237049	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60189528	1.00[ASN][1000 genomes]
rs61467163	1.00[ASN][1000 genomes]
rs6469255	1.00[JPT][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6469264	0.95[CEU][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap]
rs6982826	0.95[CEU][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.81[TSI][hapmap];0.81[EUR][1000 genomes]
rs6995033	0.95[CEU][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.88[EUR][1000 genomes]
rs6999170	0.94[CEU][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7008687	0.95[CEU][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.81[TSI][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72669109	0.86[EUR][1000 genomes]
rs72669111	0.86[EUR][1000 genomes]
rs72669122	0.85[EUR][1000 genomes]
rs72669124	0.85[EUR][1000 genomes]
rs72669127	0.85[EUR][1000 genomes]
rs72669129	0.83[EUR][1000 genomes]
rs72669131	0.83[EUR][1000 genomes]
rs72682697	1.00[ASN][1000 genomes]
rs72684719	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72684799	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72687010	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72687015	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7816624	0.95[CEU][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7817639	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7818929	1.00[ASN][1000 genomes]
rs7820734	0.94[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7835131	0.95[CEU][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7836433	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7842842	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes]
rs9656791	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9656881	0.95[CEU][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891273	chr8:110219735-110475874	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv891279	chr8:110268104-110450092	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv891280	chr8:110346363-110465481	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv1018510	chr8:110403496-110504029	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs10093885	ANGPT1	cis	parietal	SCAN
rs10093885	Hs.171169	cis	multi-tissue	Pritchard
rs10093885	PKHD1L1	cis	lymphoblastoid	seeQTL
rs10093885	EBAG9	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:110447600-110448800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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