Variant report

Variant	rs1892761
Chromosome Location	chr8:110549065-110549066
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:110528786..110530891-chr8:110547707..110549539,2	MCF-7	breast:
2	chr8:110346524..110348211-chr8:110547153..110549713,2	K562	blood:
3	chr8:110356416..110359294-chr8:110548274..110550933,2	MCF-7	breast:
4	chr8:110544819..110549449-chr8:110549976..110554355,13	K562	blood:

Variant related genes	Relation type
ENSG00000147654	Chromatin interaction
ENSG00000120533	Chromatin interaction
ENSG00000120526	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10093885	0.83[EUR][1000 genomes]
rs10100944	0.81[EUR][1000 genomes]
rs11778756	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11784792	0.84[EUR][1000 genomes]
rs11785973	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13438836	0.85[EUR][1000 genomes]
rs1598751	1.00[YRI][hapmap]
rs17368044	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17375750	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17445342	0.82[EUR][1000 genomes]
rs17446406	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1947562	0.85[AFR][1000 genomes]
rs28491535	0.82[EUR][1000 genomes]
rs55800074	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55932317	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55959787	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56109503	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56379526	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59237049	0.83[EUR][1000 genomes]
rs61741363	0.80[AFR][1000 genomes]
rs6469255	0.81[EUR][1000 genomes]
rs6469264	1.00[YRI][hapmap]
rs6995033	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7008687	0.81[EUR][1000 genomes]
rs72669109	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72669111	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72669122	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72669124	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72669127	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72669129	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72669131	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72684719	0.81[EUR][1000 genomes]
rs72684799	0.85[EUR][1000 genomes]
rs72687010	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72687015	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7816624	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7817639	0.85[EUR][1000 genomes]
rs7820734	0.85[EUR][1000 genomes]
rs7836433	0.80[EUR][1000 genomes]
rs7842842	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9656791	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891281	chr8:110450092-110558622	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:110543200-110550600	Weak transcription	GM12878-XiMat	blood
2	chr8:110543600-110551200	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr8:110544400-110550800	Weak transcription	Primary B cells from peripheral blood	blood
4	chr8:110545600-110551200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr8:110546600-110549600	Enhancers	Fetal Brain Male	brain
6	chr8:110546800-110549800	Enhancers	Fetal Lung	lung
7	chr8:110547400-110550600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr8:110547400-110550800	Weak transcription	Duodenum Mucosa	Duodenum
9	chr8:110547400-110551200	Weak transcription	Fetal Intestine Small	intestine
10	chr8:110547600-110550600	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr8:110547800-110550000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr8:110547800-110551000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr8:110548000-110551200	Weak transcription	NHEK	skin
14	chr8:110548200-110551000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr8:110548200-110551000	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr8:110548200-110551000	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr8:110548200-110551000	Weak transcription	Hela-S3	cervix
18	chr8:110548400-110549400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr8:110548400-110549600	Weak transcription	Brain Germinal Matrix	brain
20	chr8:110548400-110550000	Enhancers	K562	blood
21	chr8:110548400-110550600	Weak transcription	Fetal Brain Female	brain
22	chr8:110548400-110550800	Weak transcription	Colonic Mucosa	Colon
23	chr8:110548400-110551000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr8:110548400-110551000	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr8:110548400-110551200	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr8:110548400-110551200	Weak transcription	HSMMtube	muscle
27	chr8:110548600-110551200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr8:110548800-110549200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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