Variant report

Variant	rs28491535
Chromosome Location	chr8:110401586-110401587
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:110388617..110395072-chr8:110396032..110405839,11	K562	blood:
2	chr8:110397526..110401680-chr8:110402055..110405525,5	K562	blood:
3	chr8:110376237..110378577-chr8:110400092..110402254,2	K562	blood:
4	chr8:110374002..110377737-chr8:110399223..110401592,3	K562	blood:
5	chr8:110399100..110401680-chr8:110403337..110405156,2	K562	blood:
6	chr8:110401286..110403150-chr8:110410223..110413005,2	MCF-7	breast:
7	chr8:110399789..110401948-chr8:110406839..110408656,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000205038	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10093885	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10100944	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10108704	1.00[ASN][1000 genomes]
rs11778756	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11784792	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11785973	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13438836	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1563581	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17368044	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17375750	0.87[EUR][1000 genomes]
rs17445342	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17446406	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1892761	0.82[EUR][1000 genomes]
rs28463252	1.00[ASN][1000 genomes]
rs55800074	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55932317	0.81[EUR][1000 genomes]
rs55959787	0.82[EUR][1000 genomes]
rs56109503	0.85[EUR][1000 genomes]
rs56379526	0.85[EUR][1000 genomes]
rs59237049	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60189528	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61467163	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6469255	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6982826	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6995033	0.87[EUR][1000 genomes]
rs6999170	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7008687	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72669109	0.85[EUR][1000 genomes]
rs72669111	0.85[EUR][1000 genomes]
rs72669122	0.84[EUR][1000 genomes]
rs72669124	0.84[EUR][1000 genomes]
rs72669127	0.84[EUR][1000 genomes]
rs72669129	0.82[EUR][1000 genomes]
rs72669131	0.82[EUR][1000 genomes]
rs72682697	1.00[ASN][1000 genomes]
rs72684719	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72684799	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72687010	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72687015	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7816624	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7817639	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7818929	1.00[ASN][1000 genomes]
rs7820734	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7835131	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7836433	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9656791	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9656881	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891273	chr8:110219735-110475874	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv891279	chr8:110268104-110450092	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv891280	chr8:110346363-110465481	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	esv1845153	chr8:110397738-110421793	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv1832336	chr8:110397738-110437384	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:110401400-110402200	Enhancers	K562	blood

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