Variant report

Variant	rs72684799
Chromosome Location	chr8:110435900-110435901
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:110435315..110437873-chr8:110551355..110553690,2	K562	blood:
2	chr8:110431847..110433717-chr8:110434845..110437578,2	K562	blood:
3	chr8:110425956..110428666-chr8:110434429..110437325,2	K562	blood:
4	chr8:110424030..110426775-chr8:110434347..110438153,3	K562	blood:
5	chr8:110434476..110437151-chr8:110440574..110442401,2	K562	blood:

Variant related genes	Relation type
ENSG00000147654	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10093885	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10100944	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10108704	1.00[ASN][1000 genomes]
rs11778756	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11784792	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11785973	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13438836	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1563581	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17368044	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17375750	0.83[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs17445342	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17446406	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1892761	0.85[EUR][1000 genomes]
rs28463252	1.00[ASN][1000 genomes]
rs28491535	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55800074	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55932317	0.83[EUR][1000 genomes]
rs55959787	0.85[EUR][1000 genomes]
rs56109503	0.83[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs56379526	0.83[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs59237049	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60189528	1.00[ASN][1000 genomes]
rs61467163	1.00[ASN][1000 genomes]
rs6469255	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6982826	0.91[EUR][1000 genomes]
rs6995033	0.90[EUR][1000 genomes]
rs6999170	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7008687	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72669109	0.89[EUR][1000 genomes]
rs72669111	0.89[EUR][1000 genomes]
rs72669122	0.87[EUR][1000 genomes]
rs72669124	0.87[EUR][1000 genomes]
rs72669127	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs72669129	0.85[EUR][1000 genomes]
rs72669131	0.85[EUR][1000 genomes]
rs72682697	1.00[ASN][1000 genomes]
rs72684719	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72687010	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72687015	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7816624	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7817639	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7818929	1.00[ASN][1000 genomes]
rs7820734	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7835131	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7836433	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7842842	0.82[EUR][1000 genomes]
rs9656791	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9656881	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891273	chr8:110219735-110475874	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv891279	chr8:110268104-110450092	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv891280	chr8:110346363-110465481	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	esv1832336	chr8:110397738-110437384	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv1018510	chr8:110403496-110504029	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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