Variant report

Variant	rs7818929
Chromosome Location	chr8:110350318-110350319
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:110344786..110348564-chr8:110349076..110353866,8	MCF-7	breast:

Variant related genes	Relation type
ENSG00000120526	Chromatin interaction
ENSG00000120533	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10093885	1.00[ASN][1000 genomes]
rs10100944	1.00[ASN][1000 genomes]
rs10108704	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11778756	1.00[ASN][1000 genomes]
rs11784792	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11785973	1.00[ASN][1000 genomes]
rs13438836	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1563581	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17368044	1.00[ASN][1000 genomes]
rs17445342	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17446406	1.00[ASN][1000 genomes]
rs28463252	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28491535	1.00[ASN][1000 genomes]
rs55800074	1.00[ASN][1000 genomes]
rs59237049	1.00[ASN][1000 genomes]
rs60189528	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61467163	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6469255	1.00[ASN][1000 genomes]
rs6999170	1.00[ASN][1000 genomes]
rs7008687	1.00[ASN][1000 genomes]
rs72682697	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72684719	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72684799	1.00[ASN][1000 genomes]
rs72687010	1.00[ASN][1000 genomes]
rs72687015	1.00[ASN][1000 genomes]
rs7816624	1.00[ASN][1000 genomes]
rs7817639	1.00[ASN][1000 genomes]
rs7820734	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7835131	1.00[ASN][1000 genomes]
rs7836433	1.00[ASN][1000 genomes]
rs9656791	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9656881	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891273	chr8:110219735-110475874	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv891279	chr8:110268104-110450092	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv891280	chr8:110346363-110465481	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:110347000-110358200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:110347000-110358400	Weak transcription	Spleen	Spleen
3	chr8:110347000-110358800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr8:110347200-110354800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr8:110347200-110355000	Weak transcription	Lung	lung
6	chr8:110347200-110357600	Weak transcription	Pancreas	Pancrea
7	chr8:110347200-110358200	Weak transcription	Esophagus	oesophagus
8	chr8:110347200-110359800	Weak transcription	Gastric	stomach
9	chr8:110347400-110351200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr8:110347400-110356200	Weak transcription	Ovary	ovary
11	chr8:110347400-110358000	Weak transcription	Colonic Mucosa	Colon
12	chr8:110347400-110358400	Weak transcription	Fetal Brain Male	brain
13	chr8:110347400-110359400	Weak transcription	Aorta	Aorta
14	chr8:110347400-110359400	Weak transcription	Brain Substantia Nigra	brain
15	chr8:110347400-110360000	Weak transcription	Stomach Mucosa	stomach
16	chr8:110347600-110350400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr8:110347600-110354800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr8:110347600-110354800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr8:110347600-110356000	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr8:110347600-110357800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr8:110347600-110358200	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr8:110347600-110358200	Weak transcription	HSMMtube	muscle
23	chr8:110347600-110358400	Weak transcription	Fetal Stomach	stomach
24	chr8:110348000-110350800	Weak transcription	Psoas Muscle	Psoas
25	chr8:110348000-110351000	Weak transcription	Brain Angular Gyrus	brain
26	chr8:110348000-110356200	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr8:110348000-110358400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr8:110348200-110350600	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr8:110348200-110353400	Strong transcription	Primary B cells from peripheral blood	blood
30	chr8:110348200-110355200	Strong transcription	Fetal Muscle Trunk	muscle
31	chr8:110348200-110356600	Strong transcription	HUES48 Cell Line	embryonic stem cell
32	chr8:110348200-110356600	Strong transcription	Primary T cells fromperipheralblood	blood
33	chr8:110348200-110356600	Strong transcription	A549	lung
34	chr8:110348200-110356800	Strong transcription	Placenta	Placenta
35	chr8:110348200-110356800	Strong transcription	NH-A	brain
36	chr8:110348200-110357000	Strong transcription	HUES64 Cell Line	embryonic stem cell
37	chr8:110348200-110357000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
38	chr8:110348200-110357400	Strong transcription	Primary B cells from cord blood	blood
39	chr8:110348200-110357400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr8:110348200-110357400	Strong transcription	Fetal Intestine Large	intestine
41	chr8:110348400-110350400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
42	chr8:110348400-110350800	Genic enhancers	Fetal Brain Female	brain
43	chr8:110348400-110351000	Genic enhancers	Dnd41	blood
44	chr8:110348400-110353000	Strong transcription	Stomach Smooth Muscle	stomach
45	chr8:110348400-110354000	Weak transcription	Brain Germinal Matrix	brain
46	chr8:110348400-110356200	Weak transcription	Fetal Muscle Leg	muscle
47	chr8:110348400-110356400	Weak transcription	Right Ventricle	heart
48	chr8:110348400-110356600	Strong transcription	HUES6 Cell Line	embryonic stem cell
49	chr8:110348400-110357000	Strong transcription	HSMM	muscle
50	chr8:110348400-110360200	Weak transcription	Fetal Intestine Small	intestine

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