Variant report
| Variant | rs10108704 |
|---|---|
| Chromosome Location | chr8:110362461-110362462 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000120526 | Chromatin interaction |
| ENSG00000120533 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs10093885 | 1.00[ASN][1000 genomes] |
| rs10100944 | 1.00[ASN][1000 genomes] |
| rs11778756 | 1.00[ASN][1000 genomes] |
| rs11784792 | 0.82[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11785973 | 1.00[ASN][1000 genomes] |
| rs13438836 | 0.80[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1563581 | 0.86[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17368044 | 1.00[ASN][1000 genomes] |
| rs17445342 | 0.88[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17446406 | 1.00[ASN][1000 genomes] |
| rs28463252 | 0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28491535 | 1.00[ASN][1000 genomes] |
| rs55800074 | 1.00[ASN][1000 genomes] |
| rs59237049 | 1.00[ASN][1000 genomes] |
| rs60189528 | 0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61467163 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6469255 | 1.00[ASN][1000 genomes] |
| rs6999170 | 1.00[ASN][1000 genomes] |
| rs7008687 | 1.00[ASN][1000 genomes] |
| rs72682697 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72684719 | 0.88[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72684799 | 1.00[ASN][1000 genomes] |
| rs72687010 | 1.00[ASN][1000 genomes] |
| rs72687015 | 1.00[ASN][1000 genomes] |
| rs7816624 | 1.00[ASN][1000 genomes] |
| rs7817639 | 1.00[ASN][1000 genomes] |
| rs7818929 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7820734 | 0.81[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7835131 | 1.00[ASN][1000 genomes] |
| rs7836433 | 1.00[ASN][1000 genomes] |
| rs9656791 | 0.88[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9656881 | 0.82[AMR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv891273 | chr8:110219735-110475874 | Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 19 gene(s) | inside rSNPs | diseases |
| 2 | nsv891279 | chr8:110268104-110450092 | Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 19 gene(s) | inside rSNPs | diseases |
| 3 | nsv891280 | chr8:110346363-110465481 | Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:110348800-110364400 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
| 2 | chr8:110361000-110367000 | Weak transcription | K562 | blood |
