Variant report

Variant	rs11784792
Chromosome Location	chr8:110420820-110420821
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:110418593..110421354-chr8:110426725..110428421,2	K562	blood:
2	chr8:110420388..110423351-chr8:110425627..110427153,2	MCF-7	breast:
3	chr8:110413992..110416769-chr8:110420548..110422727,2	K562	blood:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10093885	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10100944	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10108704	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11778756	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11785973	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13438836	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1563581	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17368044	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17375750	0.89[EUR][1000 genomes]
rs17445342	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17446406	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1892761	0.84[EUR][1000 genomes]
rs28463252	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28491535	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55800074	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55932317	0.82[EUR][1000 genomes]
rs55959787	0.84[EUR][1000 genomes]
rs56109503	0.87[EUR][1000 genomes]
rs56379526	0.87[EUR][1000 genomes]
rs59237049	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60189528	1.00[ASN][1000 genomes]
rs61467163	1.00[ASN][1000 genomes]
rs6469255	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6982826	0.93[EUR][1000 genomes]
rs6995033	0.89[EUR][1000 genomes]
rs6999170	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7008687	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72669109	0.87[EUR][1000 genomes]
rs72669111	0.87[EUR][1000 genomes]
rs72669122	0.85[EUR][1000 genomes]
rs72669124	0.85[EUR][1000 genomes]
rs72669127	0.85[EUR][1000 genomes]
rs72669129	0.84[EUR][1000 genomes]
rs72669131	0.84[EUR][1000 genomes]
rs72682697	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72684719	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72684799	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72687010	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72687015	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7816624	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7817639	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7818929	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7820734	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7835131	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7836433	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7842842	0.81[EUR][1000 genomes]
rs9656791	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9656881	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891273	chr8:110219735-110475874	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv891279	chr8:110268104-110450092	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv891280	chr8:110346363-110465481	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	esv1845153	chr8:110397738-110421793	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv1832336	chr8:110397738-110437384	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv1018510	chr8:110403496-110504029	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:110418800-110421600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr8:110419800-110421200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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