Variant report

Variant	rs7842842
Chromosome Location	chr8:110530877-110530878
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:110528786..110530891-chr8:110547707..110549539,2	MCF-7	breast:
2	chr8:110527891..110531088-chr8:110532482..110535438,3	MCF-7	breast:
3	chr8:110528262..110531056-chr8:110532730..110534557,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000205038	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10093885	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes]
rs10100944	0.95[CEU][hapmap];1.00[JPT][hapmap]
rs11778756	0.95[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11784792	0.81[EUR][1000 genomes]
rs11785973	0.95[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12541569	1.00[CHB][hapmap]
rs12543415	1.00[CHB][hapmap]
rs13438836	0.95[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs1563581	1.00[JPT][hapmap]
rs17368044	0.95[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17375750	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17445342	0.95[CEU][hapmap];1.00[JPT][hapmap]
rs17446406	0.95[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17450206	1.00[CHB][hapmap]
rs17450520	1.00[CHB][hapmap]
rs1892761	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55800074	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs55932317	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55959787	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56109503	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56379526	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57439661	0.91[AFR][1000 genomes]
rs59237049	0.90[EUR][1000 genomes]
rs6469255	1.00[JPT][hapmap]
rs6469264	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]
rs6982592	1.00[CHB][hapmap]
rs6982826	0.95[CEU][hapmap];1.00[JPT][hapmap]
rs6995033	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6999170	0.94[CEU][hapmap];1.00[JPT][hapmap]
rs7008687	0.95[CEU][hapmap];1.00[JPT][hapmap]
rs72669109	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72669111	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72669122	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72669124	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72669127	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72669129	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72669131	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72684799	0.82[EUR][1000 genomes]
rs72687010	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72687015	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73700604	0.90[AFR][1000 genomes]
rs73700607	0.91[AFR][1000 genomes]
rs73700608	0.91[AFR][1000 genomes]
rs73704043	0.91[AFR][1000 genomes]
rs73704045	0.91[AFR][1000 genomes]
rs7816624	0.95[CEU][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7817639	0.82[EUR][1000 genomes]
rs7820734	0.94[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs7824177	1.00[CHB][hapmap]
rs7828075	1.00[CHB][hapmap]
rs7835131	0.95[CEU][hapmap];1.00[JPT][hapmap]
rs9656791	0.95[CEU][hapmap];1.00[JPT][hapmap]
rs9656881	0.95[CEU][hapmap];1.00[JPT][hapmap]
rs9774677	1.00[YRI][hapmap];0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891281	chr8:110450092-110558622	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7842842	Hs.171169	cis	multi-tissue	Pritchard

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:110526600-110532400	Weak transcription	K562	blood

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