Variant report
| Variant | rs57439661 |
|---|---|
| Chromosome Location | chr8:110511380-110511381 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:110510174..110512174-chr8:110514390..110516726,2 | K562 | blood: | |
| 2 | chr8:110492411..110494617-chr8:110510142..110512481,2 | MCF-7 | breast: | |
| 3 | chr8:110506183..110508052-chr8:110509587..110512256,2 | MCF-7 | breast: | |
| 4 | chr8:110510297..110513160-chr8:110550256..110552818,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000205038 | Chromatin interaction |
| ENSG00000147654 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:33)
| rs_ID | r2[population] |
|---|---|
| rs10111721 | 0.87[EUR][1000 genomes] |
| rs11987659 | 0.87[EUR][1000 genomes] |
| rs2168677 | 1.00[EUR][1000 genomes] |
| rs55786960 | 1.00[EUR][1000 genomes] |
| rs55881558 | 1.00[EUR][1000 genomes] |
| rs55932317 | 0.91[AFR][1000 genomes] |
| rs56162009 | 1.00[EUR][1000 genomes] |
| rs56224859 | 1.00[EUR][1000 genomes] |
| rs57909958 | 1.00[EUR][1000 genomes] |
| rs61443777 | 1.00[EUR][1000 genomes] |
| rs73314998 | 1.00[EUR][1000 genomes] |
| rs73700604 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73700607 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73700608 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73700609 | 1.00[EUR][1000 genomes] |
| rs73700611 | 1.00[EUR][1000 genomes] |
| rs73700612 | 1.00[EUR][1000 genomes] |
| rs73700630 | 1.00[EUR][1000 genomes] |
| rs73700890 | 1.00[EUR][1000 genomes] |
| rs73700891 | 1.00[EUR][1000 genomes] |
| rs73700892 | 1.00[EUR][1000 genomes] |
| rs73700893 | 1.00[EUR][1000 genomes] |
| rs73704012 | 1.00[EUR][1000 genomes] |
| rs73704013 | 1.00[EUR][1000 genomes] |
| rs73704019 | 1.00[EUR][1000 genomes] |
| rs73704020 | 1.00[EUR][1000 genomes] |
| rs73704024 | 1.00[EUR][1000 genomes] |
| rs73704035 | 1.00[EUR][1000 genomes] |
| rs73704042 | 1.00[EUR][1000 genomes] |
| rs73704043 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73704045 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7842842 | 0.91[AFR][1000 genomes] |
| rs9774677 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv891281 | chr8:110450092-110558622 | Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive region | 15 gene(s) | inside rSNPs | diseases |
| 2 | esv3428944 | chr8:110509626-110511624 | Inactive region | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
