Variant report

Variant	rs61443777
Chromosome Location	chr8:110537066-110537067
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10111721	0.87[EUR][1000 genomes]
rs11987659	0.87[EUR][1000 genomes]
rs2168677	1.00[EUR][1000 genomes]
rs55786960	1.00[EUR][1000 genomes]
rs55881558	1.00[EUR][1000 genomes]
rs56162009	1.00[EUR][1000 genomes]
rs56224859	1.00[EUR][1000 genomes]
rs57439661	1.00[EUR][1000 genomes]
rs57909958	1.00[EUR][1000 genomes]
rs73314998	1.00[EUR][1000 genomes]
rs73700604	1.00[EUR][1000 genomes]
rs73700607	1.00[EUR][1000 genomes]
rs73700608	1.00[EUR][1000 genomes]
rs73700609	1.00[EUR][1000 genomes]
rs73700611	1.00[EUR][1000 genomes]
rs73700612	1.00[EUR][1000 genomes]
rs73700630	1.00[EUR][1000 genomes]
rs73700890	1.00[EUR][1000 genomes]
rs73700891	1.00[EUR][1000 genomes]
rs73700892	1.00[EUR][1000 genomes]
rs73700893	1.00[EUR][1000 genomes]
rs73704012	1.00[EUR][1000 genomes]
rs73704013	1.00[EUR][1000 genomes]
rs73704019	1.00[EUR][1000 genomes]
rs73704020	1.00[EUR][1000 genomes]
rs73704024	1.00[EUR][1000 genomes]
rs73704035	1.00[EUR][1000 genomes]
rs73704042	1.00[EUR][1000 genomes]
rs73704043	1.00[EUR][1000 genomes]
rs73704045	1.00[EUR][1000 genomes]
rs9774677	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891281	chr8:110450092-110558622	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:110535000-110538400	Active TSS	GM12878-XiMat	blood
2	chr8:110536200-110537200	Enhancers	Primary B cells from peripheral blood	blood
3	chr8:110536200-110537400	Flanking Active TSS	Primary B cells from cord blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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