Variant report
| Variant | rs73314998 |
|---|---|
| Chromosome Location | chr8:110542664-110542665 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:110542223..110544442-chr8:110551304..110554292,3 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000147654 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:33)
| rs_ID | r2[population] |
|---|---|
| rs10111721 | 0.87[EUR][1000 genomes] |
| rs11987659 | 0.87[EUR][1000 genomes] |
| rs2168677 | 1.00[EUR][1000 genomes] |
| rs55786960 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs55881558 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs56162009 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs56224859 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs57439661 | 1.00[EUR][1000 genomes] |
| rs57909958 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs61443777 | 1.00[EUR][1000 genomes] |
| rs73700604 | 1.00[EUR][1000 genomes] |
| rs73700607 | 1.00[EUR][1000 genomes] |
| rs73700608 | 1.00[EUR][1000 genomes] |
| rs73700609 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73700611 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73700612 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73700630 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73700653 | 0.85[AMR][1000 genomes] |
| rs73700654 | 0.85[AMR][1000 genomes] |
| rs73700890 | 1.00[EUR][1000 genomes] |
| rs73700891 | 1.00[EUR][1000 genomes] |
| rs73700892 | 1.00[EUR][1000 genomes] |
| rs73700893 | 1.00[EUR][1000 genomes] |
| rs73704012 | 1.00[EUR][1000 genomes] |
| rs73704013 | 1.00[EUR][1000 genomes] |
| rs73704019 | 1.00[EUR][1000 genomes] |
| rs73704020 | 1.00[EUR][1000 genomes] |
| rs73704024 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73704035 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73704042 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73704043 | 1.00[EUR][1000 genomes] |
| rs73704045 | 1.00[EUR][1000 genomes] |
| rs9774677 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv891281 | chr8:110450092-110558622 | Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive region | 15 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:110541000-110543200 | Strong transcription | GM12878-XiMat | blood |
| 2 | chr8:110541000-110544400 | Strong transcription | Primary B cells from peripheral blood | blood |
