Variant report

Variant	rs11987659
Chromosome Location	chr8:110442726-110442727
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10091665	1.00[CHB][hapmap]
rs10105594	1.00[CEU][hapmap]
rs10105602	1.00[CEU][hapmap]
rs10111721	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10441509	1.00[CHB][hapmap]
rs16879653	1.00[CHB][hapmap]
rs16879659	1.00[CHB][hapmap]
rs16879680	1.00[CHB][hapmap]
rs16879730	1.00[CHB][hapmap]
rs16879807	1.00[CEU][hapmap]
rs16918465	1.00[CHB][hapmap]
rs2168677	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs55786960	0.87[EUR][1000 genomes]
rs55881558	0.87[EUR][1000 genomes]
rs56162009	0.87[EUR][1000 genomes]
rs56224859	0.87[EUR][1000 genomes]
rs57439661	0.87[EUR][1000 genomes]
rs57909958	0.87[EUR][1000 genomes]
rs61443777	0.87[EUR][1000 genomes]
rs73314998	0.87[EUR][1000 genomes]
rs73700604	0.87[EUR][1000 genomes]
rs73700607	0.87[EUR][1000 genomes]
rs73700608	0.87[EUR][1000 genomes]
rs73700609	0.87[EUR][1000 genomes]
rs73700611	0.87[EUR][1000 genomes]
rs73700612	0.87[EUR][1000 genomes]
rs73700630	0.87[EUR][1000 genomes]
rs73700890	0.87[EUR][1000 genomes]
rs73700891	0.87[EUR][1000 genomes]
rs73700892	0.87[EUR][1000 genomes]
rs73700893	0.87[EUR][1000 genomes]
rs73704012	0.87[EUR][1000 genomes]
rs73704013	0.87[EUR][1000 genomes]
rs73704019	0.87[EUR][1000 genomes]
rs73704020	0.87[EUR][1000 genomes]
rs73704024	0.87[EUR][1000 genomes]
rs73704035	0.87[EUR][1000 genomes]
rs73704042	0.87[EUR][1000 genomes]
rs73704043	0.87[EUR][1000 genomes]
rs73704045	0.87[EUR][1000 genomes]
rs7828841	1.00[CHB][hapmap]
rs7843815	1.00[CHB][hapmap]
rs9297428	1.00[CHB][hapmap]
rs9774677	1.00[CEU][hapmap];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891273	chr8:110219735-110475874	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv891279	chr8:110268104-110450092	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv891280	chr8:110346363-110465481	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv1018510	chr8:110403496-110504029	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:110441000-110442800	Enhancers	K562	blood
2	chr8:110442400-110445600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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