Variant report

Variant	rs7828841
Chromosome Location	chr8:110489004-110489005
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
PKHD1L1	TF binding region
ENSG00000248050	Chromatin interaction
ENSG00000205038	Chromatin interaction
ENSG00000147654	Chromatin interaction
ENSG00000147642	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10091665	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs10441509	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11987659	1.00[CHB][hapmap]
rs16879653	1.00[CHB][hapmap]
rs16879659	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16879680	1.00[CHB][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16879730	1.00[CHB][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16918465	1.00[CHB][hapmap]
rs56810186	1.00[ASN][1000 genomes]
rs57080527	1.00[ASN][1000 genomes]
rs73700614	1.00[ASN][1000 genomes]
rs73700627	1.00[ASN][1000 genomes]
rs73700631	1.00[ASN][1000 genomes]
rs73704027	1.00[ASN][1000 genomes]
rs73704033	1.00[ASN][1000 genomes]
rs73704041	1.00[ASN][1000 genomes]
rs73704044	1.00[ASN][1000 genomes]
rs7843815	1.00[CHB][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9297428	1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018510	chr8:110403496-110504029	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
2	nsv891281	chr8:110450092-110558622	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:110463200-110492400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr8:110486800-110491200	Weak transcription	Stomach Mucosa	stomach
3	chr8:110487800-110495000	Weak transcription	Liver	Liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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