Variant report

Variant	rs10441509
Chromosome Location	chr8:110492279-110492280
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NFYA	chr8:110492237-110492453	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:110485934..110489021-chr8:110489156..110492335,3	MCF-7	breast:
2	chr8:110490813..110493110-chr8:110549363..110552380,3	MCF-7	breast:

Variant related genes	Relation type
PKHD1L1	TF binding region
ENSG00000147654	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10091665	1.00[CHB][hapmap]
rs11987659	1.00[CHB][hapmap]
rs16879653	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs16879659	1.00[CHB][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16879674	1.00[EUR][1000 genomes]
rs16879680	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16879693	1.00[EUR][1000 genomes]
rs16879696	1.00[EUR][1000 genomes]
rs16879730	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16918465	1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs1824191	1.00[EUR][1000 genomes]
rs2124979	1.00[EUR][1000 genomes]
rs56106062	1.00[EUR][1000 genomes]
rs56810186	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57080527	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57175707	1.00[EUR][1000 genomes]
rs57556233	1.00[EUR][1000 genomes]
rs57608746	1.00[EUR][1000 genomes]
rs58602890	1.00[EUR][1000 genomes]
rs60917031	1.00[EUR][1000 genomes]
rs61247948	1.00[EUR][1000 genomes]
rs73700614	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73700615	1.00[EUR][1000 genomes]
rs73700627	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73700631	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73704014	1.00[EUR][1000 genomes]
rs73704021	1.00[EUR][1000 genomes]
rs73704027	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73704033	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73704041	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73704044	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7828841	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7843815	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9297428	1.00[CHB][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018510	chr8:110403496-110504029	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
2	nsv891281	chr8:110450092-110558622	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:110463200-110492400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr8:110487800-110495000	Weak transcription	Liver	Liver

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