Variant report

Variant	rs57080527
Chromosome Location	chr8:110528486-110528487
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:110527823..110529541-chr8:110550848..110553044,3	K562	blood:
2	chr8:110527891..110531088-chr8:110532482..110535438,3	MCF-7	breast:
3	chr8:110526872..110528592-chr8:110535005..110537105,2	K562	blood:
4	chr8:110528262..110531056-chr8:110532730..110534557,2	MCF-7	breast:
5	chr8:110525756..110528832-chr8:110532009..110534427,3	K562	blood:

Variant related genes	Relation type
ENSG00000205038	Chromatin interaction
ENSG00000147654	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10441509	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16879659	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16879674	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16879680	1.00[ASN][1000 genomes]
rs16879693	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16879696	1.00[EUR][1000 genomes]
rs16879730	1.00[ASN][1000 genomes]
rs16918465	1.00[EUR][1000 genomes]
rs1824191	1.00[EUR][1000 genomes]
rs2124979	1.00[EUR][1000 genomes]
rs56106062	1.00[EUR][1000 genomes]
rs56810186	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57175707	1.00[EUR][1000 genomes]
rs57556233	1.00[EUR][1000 genomes]
rs57608746	1.00[EUR][1000 genomes]
rs58602890	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60917031	1.00[EUR][1000 genomes]
rs61247948	1.00[EUR][1000 genomes]
rs73700614	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73700615	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73700627	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73700631	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73704014	1.00[EUR][1000 genomes]
rs73704021	1.00[EUR][1000 genomes]
rs73704027	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73704033	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73704041	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73704044	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7828841	1.00[ASN][1000 genomes]
rs7843815	1.00[ASN][1000 genomes]
rs9297428	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891281	chr8:110450092-110558622	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:110526600-110532400	Weak transcription	K562	blood
2	chr8:110527600-110529400	Enhancers	Muscle Satellite Cultured Cells	--

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