Variant report

Variant	rs9297428
Chromosome Location	chr8:110490997-110490998
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10091665	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs10441509	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11987659	1.00[CHB][hapmap]
rs16879653	1.00[CHB][hapmap];0.92[LWK][hapmap]
rs16879659	1.00[CHB][hapmap];0.92[LWK][hapmap];1.00[ASN][1000 genomes]
rs16879680	1.00[CHB][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16879730	1.00[CHB][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16918465	1.00[CHB][hapmap]
rs56810186	1.00[ASN][1000 genomes]
rs57080527	1.00[ASN][1000 genomes]
rs73700614	1.00[ASN][1000 genomes]
rs73700627	1.00[ASN][1000 genomes]
rs73700631	1.00[ASN][1000 genomes]
rs73704027	1.00[ASN][1000 genomes]
rs73704033	1.00[ASN][1000 genomes]
rs73704041	1.00[ASN][1000 genomes]
rs73704044	1.00[ASN][1000 genomes]
rs7828841	1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7843815	1.00[CHB][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018510	chr8:110403496-110504029	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
2	nsv891281	chr8:110450092-110558622	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:110463200-110492400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr8:110486800-110491200	Weak transcription	Stomach Mucosa	stomach
3	chr8:110487800-110495000	Weak transcription	Liver	Liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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