Variant report

Variant	rs16879730
Chromosome Location	chr8:110541221-110541222
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10091665	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs10441509	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11987659	1.00[CHB][hapmap]
rs16879653	1.00[CHB][hapmap]
rs16879659	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16879680	1.00[CHB][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16918465	1.00[CHB][hapmap]
rs56810186	1.00[ASN][1000 genomes]
rs57080527	1.00[ASN][1000 genomes]
rs73700614	1.00[ASN][1000 genomes]
rs73700627	1.00[ASN][1000 genomes]
rs73700631	1.00[ASN][1000 genomes]
rs73704027	1.00[ASN][1000 genomes]
rs73704033	1.00[ASN][1000 genomes]
rs73704041	1.00[ASN][1000 genomes]
rs73704044	1.00[ASN][1000 genomes]
rs7828841	1.00[CHB][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7843815	1.00[CHB][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9297428	1.00[CHB][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891281	chr8:110450092-110558622	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:110541000-110543200	Strong transcription	GM12878-XiMat	blood
2	chr8:110541000-110544400	Strong transcription	Primary B cells from peripheral blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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