Variant report
| Variant | rs73704041 |
|---|---|
| Chromosome Location | chr8:110507395-110507396 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:6)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:6 , 50 per page) page:
1
| No data |
(count:5 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:110502694..110504947-chr8:110505259..110508186,2 | K562 | blood: | |
| 2 | chr8:110506708..110508848-chr8:110550922..110552518,2 | MCF-7 | breast: | |
| 3 | chr8:110504163..110506389-chr8:110506692..110509341,2 | MCF-7 | breast: | |
| 4 | chr8:110506183..110508052-chr8:110509587..110512256,2 | MCF-7 | breast: | |
| 5 | chr8:110397373..110399828-chr8:110505690..110508375,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| PKHD1L1 | TF binding region |
| ENSG00000147654 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs10441509 | 0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16879659 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16879674 | 1.00[EUR][1000 genomes] |
| rs16879680 | 1.00[ASN][1000 genomes] |
| rs16879693 | 1.00[EUR][1000 genomes] |
| rs16879696 | 1.00[EUR][1000 genomes] |
| rs16879730 | 1.00[ASN][1000 genomes] |
| rs16918465 | 1.00[EUR][1000 genomes] |
| rs1824191 | 1.00[EUR][1000 genomes] |
| rs2124979 | 1.00[EUR][1000 genomes] |
| rs56106062 | 1.00[EUR][1000 genomes] |
| rs56810186 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs57080527 | 0.92[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs57175707 | 1.00[EUR][1000 genomes] |
| rs57556233 | 1.00[EUR][1000 genomes] |
| rs57608746 | 1.00[EUR][1000 genomes] |
| rs58602890 | 1.00[EUR][1000 genomes] |
| rs60917031 | 1.00[EUR][1000 genomes] |
| rs61247948 | 1.00[EUR][1000 genomes] |
| rs73700614 | 0.92[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73700615 | 1.00[EUR][1000 genomes] |
| rs73700627 | 0.92[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73700631 | 0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73704014 | 1.00[EUR][1000 genomes] |
| rs73704021 | 1.00[EUR][1000 genomes] |
| rs73704027 | 0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73704033 | 0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73704044 | 0.88[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7828841 | 1.00[ASN][1000 genomes] |
| rs7843815 | 1.00[ASN][1000 genomes] |
| rs9297428 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv891281 | chr8:110450092-110558622 | Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive region | 15 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
