Variant report

Variant	rs16879674
Chromosome Location	chr8:110518361-110518362
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:110514077..110516433-chr8:110518182..110521221,3	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10441509	1.00[EUR][1000 genomes]
rs16879571	1.00[LWK][hapmap];0.90[MKK][hapmap]
rs16879659	1.00[EUR][1000 genomes]
rs16879693	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16879696	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16918465	1.00[EUR][1000 genomes]
rs1824191	1.00[EUR][1000 genomes]
rs2124979	1.00[EUR][1000 genomes]
rs56106062	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56810186	1.00[EUR][1000 genomes]
rs57080527	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57175707	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57556233	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57608746	1.00[EUR][1000 genomes]
rs58602890	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60917031	1.00[EUR][1000 genomes]
rs61247948	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73700614	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73700615	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73700627	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73700631	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73704014	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73704021	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73704027	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73704033	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73704041	1.00[EUR][1000 genomes]
rs73704044	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891281	chr8:110450092-110558622	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:110514400-110520000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr8:110518200-110518400	Enhancers	HepG2	liver
3	chr8:110518200-110519000	Enhancers	Liver	Liver

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