Variant report

Variant	rs16879571
Chromosome Location	chr8:110455005-110455006
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs16879553	0.90[YRI][hapmap]
rs16879566	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs16879567	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs16879636	0.81[YRI][hapmap]
rs16879674	1.00[LWK][hapmap];0.90[MKK][hapmap]
rs16879693	1.00[LWK][hapmap];0.90[MKK][hapmap]
rs16879696	1.00[LWK][hapmap]
rs2124980	0.92[YRI][hapmap]
rs57175707	0.89[AFR][1000 genomes]
rs73704006	1.00[AFR][1000 genomes]
rs73704007	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73704009	0.89[AFR][1000 genomes]
rs73704014	0.80[AFR][1000 genomes]
rs73704021	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891273	chr8:110219735-110475874	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv891280	chr8:110346363-110465481	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv1018510	chr8:110403496-110504029	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
4	nsv891281	chr8:110450092-110558622	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:110454200-110455200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr8:110454200-110455400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr8:110455000-110455400	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr8:110455000-110456400	Enhancers	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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