Variant report
| Variant | rs16879680 |
|---|---|
| Chromosome Location | chr8:110522221-110522222 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:110520565..110523239-chr8:110549875..110552142,3 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000147654 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs10091665 | 1.00[CHB][hapmap];1.00[YRI][hapmap] |
| rs10441509 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
| rs11987659 | 1.00[CHB][hapmap] |
| rs16879653 | 1.00[CHB][hapmap] |
| rs16879659 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
| rs16879730 | 1.00[CHB][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16918465 | 1.00[CHB][hapmap] |
| rs56810186 | 1.00[ASN][1000 genomes] |
| rs57080527 | 1.00[ASN][1000 genomes] |
| rs73700614 | 1.00[ASN][1000 genomes] |
| rs73700627 | 1.00[ASN][1000 genomes] |
| rs73700631 | 1.00[ASN][1000 genomes] |
| rs73704027 | 1.00[ASN][1000 genomes] |
| rs73704033 | 1.00[ASN][1000 genomes] |
| rs73704041 | 1.00[ASN][1000 genomes] |
| rs73704044 | 1.00[ASN][1000 genomes] |
| rs7828841 | 1.00[CHB][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7843815 | 1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9297428 | 1.00[CHB][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv891281 | chr8:110450092-110558622 | Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive region | 15 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:110521600-110522600 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |
