Variant report

Variant	rs72669124
Chromosome Location	chr8:110545082-110545083
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:110544684..110546908-chr8:110656741..110658482,2	MCF-7	breast:
2	chr8:110539789..110542278-chr8:110544776..110546854,2	K562	blood:
3	chr8:110536248..110538918-chr8:110543681..110545993,2	K562	blood:
4	chr8:110544819..110549449-chr8:110549976..110554355,13	K562	blood:

Variant related genes	Relation type
ENSG00000147654	Chromatin interaction
ENSG00000147642	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10093885	0.85[EUR][1000 genomes]
rs10100944	0.82[EUR][1000 genomes]
rs11778756	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11784792	0.85[EUR][1000 genomes]
rs11785973	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13438836	0.87[EUR][1000 genomes]
rs17368044	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17375750	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17445342	0.84[EUR][1000 genomes]
rs17446406	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1892761	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1947562	0.85[AFR][1000 genomes]
rs28491535	0.84[EUR][1000 genomes]
rs55800074	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55932317	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55959787	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56109503	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56379526	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59237049	0.85[EUR][1000 genomes]
rs61741363	0.80[AFR][1000 genomes]
rs6469255	0.82[EUR][1000 genomes]
rs6995033	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7008687	0.82[EUR][1000 genomes]
rs72669109	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72669111	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72669122	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72669127	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72669129	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72669131	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72684719	0.82[EUR][1000 genomes]
rs72684799	0.87[EUR][1000 genomes]
rs72687010	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72687015	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7816624	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7817639	0.87[EUR][1000 genomes]
rs7820734	0.87[EUR][1000 genomes]
rs7836433	0.82[EUR][1000 genomes]
rs7842842	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9656791	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891281	chr8:110450092-110558622	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:110543200-110550600	Weak transcription	GM12878-XiMat	blood
2	chr8:110543600-110551200	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr8:110544200-110547400	Enhancers	Brain Germinal Matrix	brain
4	chr8:110544400-110550800	Weak transcription	Primary B cells from peripheral blood	blood
5	chr8:110544800-110545800	Enhancers	Breast Myoepithelial Primary Cells	Breast

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