Variant report

Variant	rs17450206
Chromosome Location	chr8:110577755-110577756
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:110549295..110551335-chr8:110575398..110578462,3	K562	blood:
2	chr8:110551531..110553698-chr8:110576444..110579063,3	K562	blood:
3	chr8:110574590..110576510-chr8:110577214..110579093,2	K562	blood:
4	chr8:110574117..110576234-chr8:110576698..110579063,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000147654	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12541569	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12543415	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12548910	1.00[ASN][1000 genomes]
rs17375750	1.00[CHB][hapmap]
rs17450520	1.00[CHB][hapmap];0.84[GIH][hapmap];1.00[ASN][1000 genomes]
rs61734661	1.00[ASN][1000 genomes]
rs6469264	1.00[CHB][hapmap]
rs6982592	1.00[CHB][hapmap];0.81[GIH][hapmap];1.00[ASN][1000 genomes]
rs6988341	1.00[ASN][1000 genomes]
rs6990312	0.95[GIH][hapmap];0.84[MEX][hapmap];0.81[TSI][hapmap];0.83[EUR][1000 genomes]
rs6995033	1.00[CHB][hapmap]
rs7813648	1.00[ASN][1000 genomes]
rs7824177	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[GIH][hapmap];0.89[MEX][hapmap];0.96[TSI][hapmap];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7828075	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7839394	1.00[ASN][1000 genomes]
rs7842842	1.00[CHB][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17450206	EBAG9	cis	parietal	SCAN

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:110553000-110587000	Weak transcription	Esophagus	oesophagus
2	chr8:110553800-110613000	Weak transcription	NHLF	lung
3	chr8:110554000-110583000	Weak transcription	HMEC	breast
4	chr8:110554000-110589200	Weak transcription	Psoas Muscle	Psoas
5	chr8:110555200-110579200	Weak transcription	Brain Angular Gyrus	brain
6	chr8:110558800-110587800	Weak transcription	Stomach Mucosa	stomach
7	chr8:110563000-110578000	Strong transcription	Primary T cells fromperipheralblood	blood
8	chr8:110563000-110580000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr8:110563000-110586800	Weak transcription	Spleen	Spleen
10	chr8:110563200-110577800	Strong transcription	Dnd41	blood
11	chr8:110563600-110580400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr8:110564400-110587200	Weak transcription	Colonic Mucosa	Colon
13	chr8:110565000-110578200	Strong transcription	Primary B cells from peripheral blood	blood
14	chr8:110565400-110580200	Strong transcription	Monocytes-CD14+_RO01746	blood
15	chr8:110565800-110586800	Weak transcription	NHEK	skin
16	chr8:110566000-110577800	Strong transcription	HUES64 Cell Line	embryonic stem cell
17	chr8:110566800-110579600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr8:110567000-110582000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr8:110567000-110593200	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr8:110567800-110587000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr8:110568000-110586800	Weak transcription	Gastric	stomach
22	chr8:110569400-110586600	Weak transcription	Fetal Heart	heart
23	chr8:110570400-110579000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr8:110570400-110579200	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr8:110570400-110582000	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr8:110570400-110586600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr8:110570400-110586800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr8:110570400-110587000	Weak transcription	Rectal Smooth Muscle	rectum
29	chr8:110570400-110593600	Weak transcription	Fetal Brain Male	brain
30	chr8:110570600-110579000	Weak transcription	Lung	lung
31	chr8:110570600-110579600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr8:110570600-110583000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr8:110570600-110583000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr8:110570600-110586000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
35	chr8:110571000-110579000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
36	chr8:110571000-110582600	Weak transcription	Brain Germinal Matrix	brain
37	chr8:110571000-110583200	Weak transcription	Brain Cingulate Gyrus	brain
38	chr8:110571000-110589200	Weak transcription	Hela-S3	cervix
39	chr8:110571000-110589200	Weak transcription	NH-A	brain
40	chr8:110571200-110578800	Weak transcription	Primary neutrophils fromperipheralblood	blood
41	chr8:110571600-110591200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr8:110571600-110592800	Weak transcription	Small Intestine	intestine
43	chr8:110571800-110582600	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr8:110571800-110582600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr8:110571800-110586800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr8:110572000-110581000	Weak transcription	Thymus	Thymus
47	chr8:110572000-110586800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr8:110572000-110586800	Weak transcription	Fetal Intestine Small	intestine
49	chr8:110572000-110586800	Weak transcription	Pancreas	Pancrea
50	chr8:110572000-110587200	Weak transcription	Fetal Stomach	stomach

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