Variant report

Variant	rs6988341
Chromosome Location	chr8:110584426-110584427
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:110582739..110585482-chr8:110585928..110589559,4	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12541569	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[YRI][hapmap];0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12543415	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[YRI][hapmap];0.96[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12548910	0.93[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17375750	1.00[CHB][hapmap]
rs17450206	1.00[CHB][hapmap];0.84[GIH][hapmap];1.00[ASN][1000 genomes]
rs17450520	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61734661	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6469258	0.80[YRI][hapmap]
rs6469259	0.89[YRI][hapmap]
rs6469264	1.00[CHB][hapmap]
rs6982592	1.00[ASW][hapmap];1.00[CHB][hapmap];0.83[LWK][hapmap];0.83[MEX][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6990312	0.84[GIH][hapmap];0.80[MEX][hapmap];0.82[EUR][1000 genomes]
rs6995033	1.00[CHB][hapmap]
rs7000579	0.80[YRI][hapmap]
rs7008100	0.89[YRI][hapmap]
rs72669122	0.84[AFR][1000 genomes]
rs72669131	0.84[AFR][1000 genomes]
rs7813648	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7824177	1.00[CHB][hapmap];0.86[GIH][hapmap];1.00[ASN][1000 genomes]
rs7828075	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7834361	0.85[LWK][hapmap];0.80[YRI][hapmap]
rs7839394	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7842842	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528208	chr8:110584174-110585288	Weak transcription Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6988341	ANGPT1	cis	parietal	SCAN

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:110553000-110587000	Weak transcription	Esophagus	oesophagus
2	chr8:110553800-110613000	Weak transcription	NHLF	lung
3	chr8:110554000-110589200	Weak transcription	Psoas Muscle	Psoas
4	chr8:110558800-110587800	Weak transcription	Stomach Mucosa	stomach
5	chr8:110563000-110586800	Weak transcription	Spleen	Spleen
6	chr8:110564400-110587200	Weak transcription	Colonic Mucosa	Colon
7	chr8:110565800-110586800	Weak transcription	NHEK	skin
8	chr8:110567000-110593200	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr8:110567800-110587000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr8:110568000-110586800	Weak transcription	Gastric	stomach
11	chr8:110569400-110586600	Weak transcription	Fetal Heart	heart
12	chr8:110570400-110586600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr8:110570400-110586800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr8:110570400-110587000	Weak transcription	Rectal Smooth Muscle	rectum
15	chr8:110570400-110593600	Weak transcription	Fetal Brain Male	brain
16	chr8:110570600-110586000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr8:110571000-110589200	Weak transcription	Hela-S3	cervix
18	chr8:110571000-110589200	Weak transcription	NH-A	brain
19	chr8:110571600-110591200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr8:110571600-110592800	Weak transcription	Small Intestine	intestine
21	chr8:110571800-110586800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr8:110572000-110586800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr8:110572000-110586800	Weak transcription	Fetal Intestine Small	intestine
24	chr8:110572000-110586800	Weak transcription	Pancreas	Pancrea
25	chr8:110572000-110587200	Weak transcription	Fetal Stomach	stomach
26	chr8:110572000-110589000	Weak transcription	Aorta	Aorta
27	chr8:110572800-110586600	Weak transcription	GM12878-XiMat	blood
28	chr8:110573000-110587200	Weak transcription	Fetal Muscle Trunk	muscle
29	chr8:110573200-110586800	Weak transcription	Fetal Brain Female	brain
30	chr8:110573200-110587800	Weak transcription	Colon Smooth Muscle	Colon
31	chr8:110576000-110586800	Weak transcription	Ovary	ovary
32	chr8:110576200-110586800	Weak transcription	Fetal Intestine Large	intestine
33	chr8:110576200-110587200	Weak transcription	Right Ventricle	heart
34	chr8:110576200-110590400	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr8:110577000-110586200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
36	chr8:110577000-110586600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr8:110577000-110586800	Weak transcription	HSMMtube	muscle
38	chr8:110577000-110587200	Weak transcription	Fetal Muscle Leg	muscle
39	chr8:110577000-110589400	Weak transcription	K562	blood
40	chr8:110577200-110587200	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr8:110577400-110586600	Weak transcription	Fetal Lung	lung
42	chr8:110577400-110586600	Weak transcription	Osteobl	bone
43	chr8:110577400-110590800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr8:110577800-110586200	Weak transcription	Liver	Liver
45	chr8:110577800-110586400	Weak transcription	HSMM	muscle
46	chr8:110577800-110586800	Weak transcription	Rectal Mucosa Donor 29	rectum
47	chr8:110577800-110587200	Weak transcription	Placenta	Placenta
48	chr8:110579400-110586000	Weak transcription	Primary B cells from cord blood	blood
49	chr8:110579400-110587200	Weak transcription	Lung	lung
50	chr8:110579600-110590400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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