Variant report

Variant	rs61734661
Chromosome Location	chr8:110587975-110587976
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:110587235..110588190-chr8:110618947..110619459,2	MCF-7	breast:
2	chr8:110582739..110585482-chr8:110585928..110589559,4	MCF-7	breast:
3	chr8:110587354..110588138-chr8:110605418..110606127,2	MCF-7	breast:
4	chr8:110587376..110590221-chr8:110656564..110658420,2	MCF-7	breast:
5	chr8:110587554..110588184-chr8:110650422..110650968,2	MCF-7	breast:
6	chr8:110587920..110590161-chr8:110647587..110650082,2	MCF-7	breast:
7	chr8:110572447..110573999-chr8:110587625..110589543,2	MCF-7	breast:
8	chr8:110587443..110588480-chr8:110650468..110651460,3	MCF-7	breast:
9	chr8:110551565..110553689-chr8:110587903..110590211,2	MCF-7	breast:
10	chr8:110358079..110360287-chr8:110586276..110588279,2	K562	blood:
11	chr8:110586311..110588193-chr8:110645798..110647826,2	MCF-7	breast:
12	chr8:110587726..110588239-chr8:110657058..110657597,2	MCF-7	breast:
13	chr8:110586558..110591065-chr8:110591815..110595528,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000147654	Chromatin interaction
ENSG00000147642	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12541569	0.96[AFR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12543415	0.96[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12548910	0.93[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17450206	1.00[ASN][1000 genomes]
rs17450520	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6982592	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6988341	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6990312	0.82[EUR][1000 genomes]
rs72669122	0.84[AFR][1000 genomes]
rs72669131	0.84[AFR][1000 genomes]
rs7813648	0.96[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7824177	1.00[ASN][1000 genomes]
rs7828075	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7839394	0.96[AFR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:110553800-110613000	Weak transcription	NHLF	lung
2	chr8:110554000-110589200	Weak transcription	Psoas Muscle	Psoas
3	chr8:110567000-110593200	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr8:110570400-110593600	Weak transcription	Fetal Brain Male	brain
5	chr8:110571000-110589200	Weak transcription	Hela-S3	cervix
6	chr8:110571000-110589200	Weak transcription	NH-A	brain
7	chr8:110571600-110591200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr8:110571600-110592800	Weak transcription	Small Intestine	intestine
9	chr8:110572000-110589000	Weak transcription	Aorta	Aorta
10	chr8:110576200-110590400	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr8:110577000-110589400	Weak transcription	K562	blood
12	chr8:110577400-110590800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr8:110579600-110590400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr8:110580000-110588800	Weak transcription	Primary T cells from cord blood	blood
15	chr8:110580000-110589400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr8:110580000-110589600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr8:110583800-110590600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr8:110583800-110591600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr8:110583800-110601600	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr8:110584200-110589600	Weak transcription	HMEC	breast
21	chr8:110584600-110589400	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr8:110585000-110591200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr8:110586000-110588000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr8:110586000-110588600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr8:110586000-110598800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr8:110586600-110588000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr8:110586600-110588000	Genic enhancers	Brain Dorsolateral Prefrontal Cortex	brain
28	chr8:110586600-110588600	Strong transcription	HepG2	liver
29	chr8:110586600-110590000	Enhancers	Fetal Lung	lung
30	chr8:110586600-110592400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr8:110586800-110588000	Strong transcription	Fetal Intestine Large	intestine
32	chr8:110586800-110588000	Genic enhancers	Gastric	stomach
33	chr8:110586800-110588000	Strong transcription	Rectal Mucosa Donor 29	rectum
34	chr8:110586800-110588000	Strong transcription	Sigmoid Colon	Sigmoid Colon
35	chr8:110586800-110588200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr8:110586800-110588200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr8:110586800-110588200	Genic enhancers	Pancreas	Pancrea
38	chr8:110586800-110588200	Strong transcription	NHEK	skin
39	chr8:110586800-110588400	Strong transcription	Fetal Intestine Small	intestine
40	chr8:110587000-110588000	Genic enhancers	Esophagus	oesophagus
41	chr8:110587000-110589400	Weak transcription	Brain Angular Gyrus	brain
42	chr8:110587000-110591600	Enhancers	Adipose Nuclei	Adipose
43	chr8:110587000-110593200	Weak transcription	NHDF-Ad	bronchial
44	chr8:110587200-110588000	Enhancers	Brain Inferior Temporal Lobe	brain
45	chr8:110587200-110588000	Strong transcription	Fetal Stomach	stomach
46	chr8:110587200-110588000	Genic enhancers	Left Ventricle	heart
47	chr8:110587200-110588200	Enhancers	Brain Substantia Nigra	brain
48	chr8:110587200-110588200	Enhancers	Fetal Muscle Trunk	muscle
49	chr8:110587200-110588200	Enhancers	Lung	lung
50	chr8:110587200-110588400	Enhancers	Fetal Muscle Leg	muscle

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