Variant report

Variant	rs11987770
Chromosome Location	chr8:114205997-114205998
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11988898	1.00[YRI][hapmap]
rs11989169	0.85[YRI][hapmap]
rs11990737	0.83[YRI][hapmap]
rs11994389	1.00[YRI][hapmap]
rs11995029	1.00[YRI][hapmap]
rs11995387	1.00[YRI][hapmap]
rs11998403	1.00[YRI][hapmap]
rs1504348	1.00[YRI][hapmap]
rs55637339	0.93[AFR][1000 genomes]
rs57741560	0.93[AFR][1000 genomes]
rs60043040	1.00[AFR][1000 genomes]
rs73701333	1.00[AFR][1000 genomes]
rs73701334	1.00[AFR][1000 genomes]
rs73702272	1.00[AFR][1000 genomes]
rs73702284	0.93[AFR][1000 genomes]
rs73702285	0.93[AFR][1000 genomes]
rs73702286	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754581	chr8:114029421-114419106	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv831428	chr8:114102983-114320802	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv916637	chr8:114116303-114338450	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1035014	chr8:114180224-114261619	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1022803	chr8:114180224-114354093	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1019367	chr8:114205501-114288454	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:114205200-114206000	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr8:114205400-114206000	Enhancers	Hela-S3	cervix

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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