Variant report

Variant	rs11988354
Chromosome Location	chr8:106878825-106878826
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10093619	0.81[AMR][1000 genomes]
rs11984472	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:106877600-106879000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr8:106878000-106879400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr8:106878200-106879400	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr8:106878400-106879200	Enhancers	Pancreatic Islets	Pancreatic Islet
5	chr8:106878400-106879400	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr8:106878400-106880200	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr8:106878600-106879000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr8:106878600-106879200	Enhancers	Brain Germinal Matrix	brain
9	chr8:106878600-106879400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr8:106878600-106879400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr8:106878600-106879800	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr8:106878600-106879800	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr8:106878600-106879800	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr8:106878600-106879800	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr8:106878800-106879800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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