Variant report

Variant	rs11984472
Chromosome Location	chr8:106878559-106878560
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10111735	0.94[ASW][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.83[LWK][hapmap]
rs10113065	0.89[AMR][1000 genomes]
rs11988354	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13439490	1.00[GIH][hapmap]
rs16892417	1.00[CHD][hapmap];1.00[GIH][hapmap]
rs28407873	0.81[AFR][1000 genomes]
rs28625324	0.81[AFR][1000 genomes]
rs28840445	0.81[AFR][1000 genomes]
rs57906084	0.81[AFR][1000 genomes]
rs58053906	0.81[AFR][1000 genomes]
rs58775053	0.80[AFR][1000 genomes]
rs6469016	0.88[ASW][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap]
rs73309061	0.81[AFR][1000 genomes]
rs7821554	1.00[CHD][hapmap]
rs9283943	1.00[CHD][hapmap]
rs9297376	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:106877600-106879000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr8:106878000-106879400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr8:106878200-106879400	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr8:106878400-106879200	Enhancers	Pancreatic Islets	Pancreatic Islet
5	chr8:106878400-106879400	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr8:106878400-106880200	Enhancers	HUES48 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links