Variant report

Variant	rs13439490
Chromosome Location	chr8:106943699-106943700
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10086651	1.00[AMR][1000 genomes]
rs10097656	1.00[AMR][1000 genomes]
rs10107042	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10111735	1.00[GIH][hapmap]
rs10112953	1.00[AMR][1000 genomes]
rs10113453	1.00[AMR][1000 genomes]
rs13438864	1.00[AMR][1000 genomes]
rs13439200	1.00[AMR][1000 genomes]
rs13439259	1.00[AMR][1000 genomes]
rs13439428	1.00[AMR][1000 genomes]
rs16873937	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16873944	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16873975	1.00[AMR][1000 genomes]
rs16873988	1.00[AMR][1000 genomes]
rs16874050	1.00[AMR][1000 genomes]
rs16892417	1.00[GIH][hapmap];0.82[YRI][hapmap]
rs28434751	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28472579	1.00[AMR][1000 genomes]
rs28552923	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4588821	0.88[YRI][hapmap]
rs56246046	1.00[AMR][1000 genomes]
rs57753827	1.00[AMR][1000 genomes]
rs58338040	1.00[AMR][1000 genomes]
rs59633032	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60129439	1.00[AMR][1000 genomes]
rs6469016	1.00[GIH][hapmap]
rs7009543	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73698371	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73698372	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73700515	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73700521	1.00[AMR][1000 genomes]
rs73700540	1.00[AMR][1000 genomes]
rs73700541	1.00[AMR][1000 genomes]
rs73700544	1.00[AMR][1000 genomes]
rs7821554	1.00[GIH][hapmap]
rs7834726	1.00[GIH][hapmap]
rs7844560	1.00[AMR][1000 genomes]
rs9283943	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs9297373	0.94[AFR][1000 genomes]
rs9297376	1.00[YRI][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv611840	chr8:106913294-107265915	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1019518	chr8:106923469-106959075	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv515580	chr8:106925995-106956427	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv3324625	chr8:106926825-106951186	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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