Variant report

Variant	rs9297373
Chromosome Location	chr8:106924117-106924118
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EBF1	chr8:106924036-106924228	GM12878	blood:	n/a	chr8:106924135-106924146
2	FOS	chr8:106923870-106924210	MCF10A-Er-Src	breast:	n/a	n/a
3	STAT3	chr8:106923996-106924249	MCF10A-Er-Src	breast:	n/a	n/a
4	FOS	chr8:106923893-106924188	MCF10A-Er-Src	breast:	n/a	n/a
5	FOS	chr8:106923838-106924215	MCF10A-Er-Src	breast:	n/a	n/a
6	POLR2A	chr8:106923890-106924305	SK-N-MC	brain:	n/a	n/a

Variant related genes	Relation type
ENSG00000251003	TF binding region

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10086651	1.00[EUR][1000 genomes]
rs10097656	1.00[EUR][1000 genomes]
rs10107042	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10111753	1.00[EUR][1000 genomes]
rs10112168	1.00[EUR][1000 genomes]
rs10112953	1.00[EUR][1000 genomes]
rs10113453	1.00[EUR][1000 genomes]
rs1080610	1.00[EUR][1000 genomes]
rs1119015	1.00[EUR][1000 genomes]
rs13438864	1.00[EUR][1000 genomes]
rs13439088	1.00[EUR][1000 genomes]
rs13439200	1.00[EUR][1000 genomes]
rs13439259	1.00[EUR][1000 genomes]
rs13439428	1.00[EUR][1000 genomes]
rs16873937	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16873944	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16873975	1.00[EUR][1000 genomes]
rs16873988	1.00[EUR][1000 genomes]
rs16874050	1.00[EUR][1000 genomes]
rs16874113	1.00[EUR][1000 genomes]
rs16892417	1.00[EUR][1000 genomes]
rs28434751	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28472579	1.00[EUR][1000 genomes]
rs28552923	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4588821	1.00[EUR][1000 genomes]
rs56246046	1.00[EUR][1000 genomes]
rs56892538	1.00[EUR][1000 genomes]
rs57753827	1.00[EUR][1000 genomes]
rs58338040	1.00[EUR][1000 genomes]
rs58431748	1.00[EUR][1000 genomes]
rs59633032	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60129439	1.00[EUR][1000 genomes]
rs61088261	1.00[EUR][1000 genomes]
rs7009543	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73698371	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73698372	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73698605	1.00[EUR][1000 genomes]
rs73700515	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73700521	1.00[EUR][1000 genomes]
rs73700539	1.00[EUR][1000 genomes]
rs73700540	1.00[EUR][1000 genomes]
rs73700541	1.00[EUR][1000 genomes]
rs73700543	1.00[EUR][1000 genomes]
rs73700544	1.00[EUR][1000 genomes]
rs73700549	1.00[EUR][1000 genomes]
rs73700552	1.00[EUR][1000 genomes]
rs7844560	1.00[EUR][1000 genomes]
rs9283943	1.00[EUR][1000 genomes]
rs9297376	1.00[EUR][1000 genomes]
rs9297377	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv891261	chr8:106880649-106932634	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv611840	chr8:106913294-107265915	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1019518	chr8:106923469-106959075	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:106915200-106930200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr8:106921000-106929800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr8:106921600-106925200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr8:106922600-106925000	Weak transcription	Fetal Kidney	kidney
5	chr8:106923200-106924800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr8:106924000-106925800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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